RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 NFXL1Q6ZNB6 911 aa12.19□□□□□ -0.46
MCF2L-216ENST00000439475 RNF207Q6ZRF8 634 aa12.19□□□□□ -0.46
MCF2L-216ENST00000439475 RNF180Q86T96 592 aa12.19□□□□□ -0.46
MCF2L-216ENST00000439475 MCF2L2Q86YR7 1114 aa12.19□□□□□ -0.46
MCF2L-216ENST00000439475 MB21D2Q8IYB1 491 aaPredicted RBP12.19□□□□□ -0.46
MCF2L-216ENST00000439475 CTCFLQ8NI51 663 aaPredicted RBP12.19□□□□□ -0.46
MCF2L-216ENST00000439475 IGDCC4Q8TDY8 1250 aa12.19□□□□□ -0.46
MCF2L-216ENST00000439475 NUP133Q8WUM0 1156 aa12.19□□□□□ -0.46
MCF2L-216ENST00000439475 NEK1Q96PY6 1258 aa12.19□□□□□ -0.46
MCF2L-216ENST00000439475 MAP3K14Q99558 947 aa12.19□□□□□ -0.46
MCF2L-216ENST00000439475 SPC25Q9HBM1 224 aa12.19□□□□□ -0.46
MCF2L-216ENST00000439475 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.19□□□□□ -0.46
MCF2L-216ENST00000439475 CYP39A1Q9NYL5 469 aa12.19□□□□□ -0.46
MCF2L-216ENST00000439475 ZHX1Q9UKY1 873 aaPredicted RBP12.19□□□□□ -0.46
MCF2L-216ENST00000439475 MRPL11Q9Y3B7 192 aaKnown RBP12.19□□□□□ -0.46
MCF2L-216ENST00000439475 SMCHD1A6NHR9 2005 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 PALM3A6NDB9 673 aaPredicted RBP12.18□□□□□ -0.46
MCF2L-216ENST00000439475 SNAI1O95863 264 aaPredicted RBP12.18□□□□□ -0.46
MCF2L-216ENST00000439475 MYCNP04198 464 aaPredicted RBP12.18□□□□□ -0.46
MCF2L-216ENST00000439475 HMGB1P09429 215 aaKnown RBP12.18□□□□□ -0.46
MCF2L-216ENST00000439475 ZNF865P0CJ78 1059 aaPredicted RBP12.18□□□□□ -0.46
MCF2L-216ENST00000439475 CALM1P0DP23 149 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 CALM2P0DP24 149 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 CALM3P0DP25 149 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 KIF5BP33176 963 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 GNAQP50148 359 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 CNTN2Q02246 1040 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 BAATQ14032 418 aaPredicted RBP12.18□□□□□ -0.46
MCF2L-216ENST00000439475 GRM4Q14833 912 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 ANO1Q5XXA6 986 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 ARMCX2Q7L311 632 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 FBXO11Q86XK2 927 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 RGS22Q8NE09 1264 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 AMNQ9BXJ7 453 aa12.18□□□□□ -0.46
MCF2L-216ENST00000439475 SOWAHBA6NEL2 793 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 DDAH1O94760 285 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 CALML3P27482 149 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 LIFRP42702 1097 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 QRICH1Q2TAL8 776 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 TSGA10IPQ3SY00 556 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 USH1GQ495M9 461 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 CCDC144CPQ8IYA2 1237 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 STAG2Q8N3U4 1231 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 DNERQ8NFT8 737 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 DIS3LQ8TF46 1054 aaKnown RBP12.17□□□□□ -0.46
MCF2L-216ENST00000439475 LZTS2Q9BRK4 669 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 SENP6Q9GZR1 1112 aaPredicted RBP12.17□□□□□ -0.46
MCF2L-216ENST00000439475 CPVLQ9H3G5 476 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 JMJD4Q9H9V9 463 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 XPNPEP3Q9NQH7 507 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 MAD2L2Q9UI95 211 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 TAF6LQ9Y6J9 622 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 MYH6P13533 1939 aa12.17□□□□□ -0.46
MCF2L-216ENST00000439475 NFIBO00712 420 aa12.16□□□□□ -0.46
MCF2L-216ENST00000439475 EPB41L2O43491 1005 aaKnown RBP12.16□□□□□ -0.46
MCF2L-216ENST00000439475 EIF5BO60841 1220 aaKnown RBP12.16□□□□□ -0.46
MCF2L-216ENST00000439475 DUSP11O75319 330 aaKnown RBP12.16□□□□□ -0.46
MCF2L-216ENST00000439475 SMARCA1P28370 1054 aa12.16□□□□□ -0.46
MCF2L-216ENST00000439475 ANTXR2P58335 489 aa12.16□□□□□ -0.46
MCF2L-216ENST00000439475 FGD1P98174 961 aa12.16□□□□□ -0.46
MCF2L-216ENST00000439475 TROAPQ12815 778 aa12.16□□□□□ -0.46
MCF2L-216ENST00000439475 GJC2Q5T442 439 aaPredicted RBP12.16□□□□□ -0.46
MCF2L-216ENST00000439475 DHX32Q7L7V1 743 aaKnown RBP12.16□□□□□ -0.46
MCF2L-216ENST00000439475 ZNF654Q8IZM8 581 aa12.16□□□□□ -0.46
MCF2L-216ENST00000439475 SAMD3Q8N6K7 520 aa12.16□□□□□ -0.46
MCF2L-216ENST00000439475 CLEC4DQ8WXI8 215 aa12.16□□□□□ -0.46
MCF2L-216ENST00000439475 MAP3K20Q9NYL2 800 aaKnown RBP12.16□□□□□ -0.46
MCF2L-216ENST00000439475 SLC12A7Q9Y666 1083 aa12.16□□□□□ -0.46
MCF2L-216ENST00000439475 PDE4DIPQ5VU43 2346 aa12.16□□□□□ -0.46
MCF2L-216ENST00000439475 SH2B2O14492 632 aaPredicted RBP12.15□□□□□ -0.46
MCF2L-216ENST00000439475 ZBTB5O15062 677 aa12.15□□□□□ -0.46
MCF2L-216ENST00000439475 COL6A1P12109 1028 aa12.15□□□□□ -0.46
MCF2L-216ENST00000439475 TAL1P17542 331 aaPredicted RBP12.15□□□□□ -0.46
MCF2L-216ENST00000439475 MNX1P50219 401 aaPredicted RBP12.15□□□□□ -0.46
MCF2L-216ENST00000439475 ALDH5A1P51649 535 aaPredicted RBP12.15□□□□□ -0.46
MCF2L-216ENST00000439475 RPS6P62753 249 aaKnown RBP12.15□□□□□ -0.46
MCF2L-216ENST00000439475 LRRC41Q15345 812 aa12.15□□□□□ -0.46
MCF2L-216ENST00000439475 CCDC144BQ3MJ40 725 aa12.15□□□□□ -0.46
MCF2L-216ENST00000439475 IQSEC1Q6DN90 963 aa12.15□□□□□ -0.46
MCF2L-216ENST00000439475 NOL8Q76FK4 1167 aaKnown RBP12.15□□□□□ -0.46
MCF2L-216ENST00000439475 HOMER1Q86YM7 354 aa12.15□□□□□ -0.46
MCF2L-216ENST00000439475 FGD4Q96M96 766 aa12.15□□□□□ -0.46
MCF2L-216ENST00000439475 RIOX1Q9H6W3 641 aa12.15□□□□□ -0.46
MCF2L-216ENST00000439475 LY9Q9HBG7 655 aa12.15□□□□□ -0.46
MCF2L-216ENST00000439475 VTA1Q9NP79 307 aa12.15□□□□□ -0.46
MCF2L-216ENST00000439475 PNMA6FA0A0J9YX94 578 aa12.14□□□□□ -0.47
MCF2L-216ENST00000439475 PSMA5P28066 241 aa12.14□□□□□ -0.47
MCF2L-216ENST00000439475 HSPA4P34932 840 aa12.14□□□□□ -0.47
MCF2L-216ENST00000439475 TNFAIP2Q03169 654 aa12.14□□□□□ -0.47
MCF2L-216ENST00000439475 PDE4DQ08499 809 aa12.14□□□□□ -0.47
MCF2L-216ENST00000439475 PCSK9Q8NBP7 692 aaKnown RBP12.14□□□□□ -0.47
MCF2L-216ENST00000439475 MTMR8Q96EF0 704 aa12.14□□□□□ -0.47
MCF2L-216ENST00000439475 TSEN34Q9BSV6 310 aaKnown RBP12.14□□□□□ -0.47
MCF2L-216ENST00000439475 AP5M1Q9H0R1 490 aa12.14□□□□□ -0.47
MCF2L-216ENST00000439475 SENP2Q9HC62 589 aa12.14□□□□□ -0.47
MCF2L-216ENST00000439475 SEC63Q9UGP8 760 aaKnown RBP12.14□□□□□ -0.47
MCF2L-216ENST00000439475 PCDHA1Q9Y5I3 950 aa12.14□□□□□ -0.47
MCF2L-216ENST00000439475 MCM3APO60318 1980 aa12.14□□□□□ -0.47
MCF2L-216ENST00000439475 MOXD2PA6NHM9 499 aa12.13□□□□□ -0.47
MCF2L-216ENST00000439475 H0YGN5 161 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms