RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CFAP74Q9C0B2 1584 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 SGSM2O43147 1006 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 CTNND1O60716 968 aaKnown RBP7.82□□□□□ -1.16
VPS53-204ENST00000437048 SEC24BO95487 1268 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 APOA4P06727 396 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 KLC1Q07866 573 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 ATP2B3Q16720 1220 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 ABCC12Q96J65 1359 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 RCSD1Q6JBY9 416 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 TTC39CQ8N584 583 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.82□□□□□ -1.16
VPS53-204ENST00000437048 GTPBP6O43824 516 aaPredicted RBP7.82□□□□□ -1.16
VPS53-204ENST00000437048 SH3BP5O60239 455 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 MCF2P10911 925 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 TSPY1Q01534 308 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 CYTH1Q15438 398 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 C16orf87Q6PH81 154 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 PDZD8Q8NEN9 1154 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 FNBP1Q96RU3 617 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 H0Y626 953 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 TMCC1O94876 653 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 TRIM16O95361 564 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 CCT2P78371 535 aaKnown RBP7.82□□□□□ -1.16
VPS53-204ENST00000437048 MYO1EQ12965 1108 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 BEND3Q5T5X7 828 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 FMO2Q99518 471 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 IQANK1A0A1B0GTG1 560 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 ENO4A6NNW6 628 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 MEIS1O00470 390 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 KRT37O76014 449 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 ATP5BP06576 529 aaKnown RBP7.82□□□□□ -1.16
VPS53-204ENST00000437048 HOXC8P31273 242 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 SLFN12Q8IYM2 578 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 HORMAD1Q86X24 394 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 MAP3K13O43283 966 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 TTC6Q86TZ1 520 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 RSAD2Q8WXG1 361 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 CCND1P24385 295 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 PSMD2Q13200 908 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 KRT26Q7Z3Y9 468 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 PSMA3P25788 255 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 AFMP43652 599 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 KCTD17Q8N5Z5 321 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 CABP1Q9NZU7 370 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 ACADSP16219 412 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 SETD3Q86TU7 594 aaPredicted RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 USP19O94966 1318 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 TBC1D8O95759 1140 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 DHX38Q92620 1227 aaKnown RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 ERBB4Q15303 1308 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 MAPKBP1O60336 1514 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 ZNF233A6NK53 670 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 ZPR1O75312 459 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 PYGMP11217 842 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 DCUN1D2Q6PH85 259 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 SYDE1Q6ZW31 735 aaPredicted RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 H2AFZP0C0S5 128 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 LIG3P49916 1009 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 H2AFVQ71UI9 128 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 C19orf60Q96EN9 201 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 ARHGEF25Q86VW2 580 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 PALM2Q8IXS6 379 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 PROM2Q8N271 834 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 TRIML2Q8N7C3 387 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 MRPL47Q9HD33 250 aaKnown RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 PPANQ9NQ55 473 aaKnown RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 TMOD3Q9NYL9 352 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 PPP6R2O75170 966 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 ATF2P15336 505 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 GCFC2P16383 781 aaKnown RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 CAPRIN1Q14444 709 aaKnown RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 INHBAP08476 426 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 SCP2P22307 547 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 INAQ16352 499 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 KAZNQ674X7 775 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 APBB2Q92870 758 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 AP4S1Q9Y587 144 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 SNX5Q9Y5X3 404 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 CHEK2O96017 543 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 HSPA2P54652 639 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 WDR75Q8IWA0 830 aaKnown RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 TTC13Q8NBP0 860 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 DDI1Q8WTU0 396 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 RSPH1Q8WYR4 309 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 FGD4Q96M96 766 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 TRIM45Q9H8W5 580 aaPredicted RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 MAST1Q9Y2H9 1570 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 JPH2Q9BR39 696 aaPredicted RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 FRMD8Q9BZ67 464 aaPredicted RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 PFASO15067 1338 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 CACNA1FO60840 1977 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 PNMA6AP0CW24 399 aaPredicted RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS53-204ENST00000437048 NEK8Q86SG6 692 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 SCG3Q8WXD2 468 aaKnown RBP7.81□□□□□ -1.16
VPS53-204ENST00000437048 PDE11AQ9HCR9 933 aa7.81□□□□□ -1.16
VPS53-204ENST00000437048 SPARCL1Q14515 664 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 LDHAL6AQ6ZMR3 332 aa7.8□□□□□ -1.16
VPS53-204ENST00000437048 AGGF1Q8N302 714 aaeCLIP7.8□□□□□ -1.16
VPS53-204ENST00000437048 STX19Q8N4C7 294 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms