RNA–Protein interactions for RNA: ENST00000423567.1

USP49-204, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 2

Gene USP49, Length 752 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-204ENST00000423567 MCM5P33992 734 aa12.77□□□□□ -0.37
USP49-204ENST00000423567 NECTIN1Q15223 517 aa12.77□□□□□ -0.37
USP49-204ENST00000423567 STOX1Q6ZVD7 989 aa12.77□□□□□ -0.37
USP49-204ENST00000423567 CHST3Q7LGC8 479 aa12.77□□□□□ -0.37
USP49-204ENST00000423567 CATIPQ7Z7H3 387 aa12.77□□□□□ -0.37
USP49-204ENST00000423567 MB21D2Q8IYB1 491 aaPredicted RBP12.77□□□□□ -0.37
USP49-204ENST00000423567 MTA3Q9BTC8 594 aa12.77□□□□□ -0.37
USP49-204ENST00000423567 DDX20Q9UHI6 824 aaKnown RBP12.77□□□□□ -0.37
USP49-204ENST00000423567 PCDHB8Q9UN66 801 aa12.77□□□□□ -0.37
USP49-204ENST00000423567 TAF6LQ9Y6J9 622 aa12.77□□□□□ -0.37
USP49-204ENST00000423567 PRC1O43663 620 aa12.76□□□□□ -0.37
USP49-204ENST00000423567 REC8O95072 547 aa12.76□□□□□ -0.37
USP49-204ENST00000423567 NSMFQ6X4W1 530 aa12.76□□□□□ -0.37
USP49-204ENST00000423567 NFXL1Q6ZNB6 911 aa12.76□□□□□ -0.37
USP49-204ENST00000423567 NECAB2Q7Z6G3 386 aa12.76□□□□□ -0.37
USP49-204ENST00000423567 ZNF467Q7Z7K2 595 aaPredicted RBP12.76□□□□□ -0.37
USP49-204ENST00000423567 TMTC2Q8N394 836 aa12.76□□□□□ -0.37
USP49-204ENST00000423567 UBA5Q9GZZ9 404 aa12.76□□□□□ -0.37
USP49-204ENST00000423567 A1CFQ9NQ94 594 aaKnown RBP12.76□□□□□ -0.37
USP49-204ENST00000423567 OGDHLQ9ULD0 1010 aa12.76□□□□□ -0.37
USP49-204ENST00000423567 WDR19Q8NEZ3 1342 aa12.76□□□□□ -0.37
USP49-204ENST00000423567 COL11A1P12107 1806 aaPredicted RBP12.76□□□□□ -0.37
USP49-204ENST00000423567 DNAJC25-GNG10A0A024R161 153 aa12.75□□□□□ -0.37
USP49-204ENST00000423567 SEPT4O43236 478 aa12.75□□□□□ -0.37
USP49-204ENST00000423567 IGHA2P01877 340 aa12.75□□□□□ -0.37
USP49-204ENST00000423567 KRT32Q14532 448 aa12.75□□□□□ -0.37
USP49-204ENST00000423567 CDC37Q16543 378 aaPredicted RBP12.75□□□□□ -0.37
USP49-204ENST00000423567 TMEM87BQ96K49 555 aa12.75□□□□□ -0.37
USP49-204ENST00000423567 SYNGAP1Q96PV0 1343 aa12.75□□□□□ -0.37
USP49-204ENST00000423567 VAT1LQ9HCJ6 419 aa12.75□□□□□ -0.37
USP49-204ENST00000423567 PTPDC1A2A3K4 754 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 CCDC69A6NI79 296 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 ASB14A6NK59 587 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 KLRF2D3W0D1 207 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 ANTXR2P58335 489 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 GRM4Q14833 912 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 USH1GQ495M9 461 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 MUM1L1Q5H9M0 696 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 PRAMEF19Q5SWL8 479 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 MAMDC4Q6UXC1 1216 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 ADGRF4Q8IZF3 695 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 TRPV1Q8NER1 839 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 IGDCC4Q8TDY8 1250 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 NUP133Q8WUM0 1156 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 DPF3Q92784 378 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 PAWRQ96IZ0 340 aaKnown RBP12.74□□□□□ -0.37
USP49-204ENST00000423567 NEK1Q96PY6 1258 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 MPHOSPH6Q99547 160 aaKnown RBP12.74□□□□□ -0.37
USP49-204ENST00000423567 CPVLQ9H3G5 476 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 ADD3Q9UEY8 706 aaKnown RBP12.74□□□□□ -0.37
USP49-204ENST00000423567 ZHX1Q9UKY1 873 aaPredicted RBP12.74□□□□□ -0.37
USP49-204ENST00000423567 CENPFP49454 3210 aa12.74□□□□□ -0.37
USP49-204ENST00000423567 ABCB11O95342 1321 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 DDAH1O94760 285 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 RARBP10826 455 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 AKR1A1P14550 325 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 KIF5BP33176 963 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 TRAF1Q13077 416 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 RNF207Q6ZRF8 634 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 ARMCX2Q7L311 632 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 UBE2Q1Q7Z7E8 422 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 FBXO11Q86XK2 927 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 FAM133AQ8N9E0 248 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 ARRDC4Q8NCT1 418 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 CTCFLQ8NI51 663 aaPredicted RBP12.73□□□□□ -0.37
USP49-204ENST00000423567 ABHD16BQ9H3Z7 469 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 C11orf49Q9H6J7 331 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 JMJD4Q9H9V9 463 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.73□□□□□ -0.37
USP49-204ENST00000423567 CYP39A1Q9NYL5 469 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 MAD2L2Q9UI95 211 aa12.73□□□□□ -0.37
USP49-204ENST00000423567 PALM3A6NDB9 673 aaPredicted RBP12.72□□□□□ -0.37
USP49-204ENST00000423567 NFIBO00712 420 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 SH2B2O14492 632 aaPredicted RBP12.72□□□□□ -0.37
USP49-204ENST00000423567 HMGB1P09429 215 aaKnown RBP12.72□□□□□ -0.37
USP49-204ENST00000423567 CALM1P0DP23 149 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 CALM2P0DP24 149 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 CALM3P0DP25 149 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 TAL1P17542 331 aaPredicted RBP12.72□□□□□ -0.37
USP49-204ENST00000423567 LIFRP42702 1097 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 FGD1P98174 961 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 CNTN2Q02246 1040 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 TROAPQ12815 778 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 BAATQ14032 418 aaPredicted RBP12.72□□□□□ -0.37
USP49-204ENST00000423567 QRICH1Q2TAL8 776 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 TSGA10IPQ3SY00 556 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 PRPF38BQ5VTL8 546 aaKnown RBP12.72□□□□□ -0.37
USP49-204ENST00000423567 SYNE3Q6ZMZ3 975 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 MCF2L2Q86YR7 1114 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 CCDC144CPQ8IYA2 1237 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 ZNF654Q8IZM8 581 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 STAG2Q8N3U4 1231 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 DIS3LQ8TF46 1054 aaKnown RBP12.72□□□□□ -0.37
USP49-204ENST00000423567 MAP3K14Q99558 947 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 AMNQ9BXJ7 453 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 LY9Q9HBG7 655 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 SENP2Q9HC62 589 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 FAM184BQ9ULE4 1060 aa12.72□□□□□ -0.37
USP49-204ENST00000423567 MRPL11Q9Y3B7 192 aaKnown RBP12.72□□□□□ -0.37
USP49-204ENST00000423567 SLC12A7Q9Y666 1083 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms