RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 QRICH1Q2TAL8 776 aa16.33■□□□□ 0.2
SKA1-202ENST00000398452 KIAA1755Q5JYT7 1200 aa16.33■□□□□ 0.2
SKA1-202ENST00000398452 PPP1R18Q6NYC8 613 aa16.33■□□□□ 0.2
SKA1-202ENST00000398452 BICD2Q8TD16 824 aa16.33■□□□□ 0.2
SKA1-202ENST00000398452 GPKOWQ92917 476 aaPredicted RBP eCLIP16.33■□□□□ 0.28e-6■■■□□ 18.6
SKA1-202ENST00000398452 MCOLN1Q9GZU1 580 aa16.33■□□□□ 0.2
SKA1-202ENST00000398452 BARHL2Q9NY43 387 aa16.33■□□□□ 0.2
SKA1-202ENST00000398452 GOLGA6L22H0YM25 854 aa16.32■□□□□ 0.2
SKA1-202ENST00000398452 MMP1P03956 469 aa16.32■□□□□ 0.2
SKA1-202ENST00000398452 WWC2Q6AWC2 1192 aa16.32■□□□□ 0.2
SKA1-202ENST00000398452 OTUD7BQ6GQQ9 843 aa16.32■□□□□ 0.2
SKA1-202ENST00000398452 CCDC174Q6PII3 467 aa16.32■□□□□ 0.2
SKA1-202ENST00000398452 FERMT3Q86UX7 667 aa16.32■□□□□ 0.2
SKA1-202ENST00000398452 PNMA3Q9UL41 463 aa16.32■□□□□ 0.2
SKA1-202ENST00000398452 PPP1R9AQ9ULJ8 1098 aa16.32■□□□□ 0.2
SKA1-202ENST00000398452 PCDHA1Q9Y5I3 950 aa16.32■□□□□ 0.2
SKA1-202ENST00000398452 MYPNQ86TC9 1320 aa16.31■□□□□ 0.2
SKA1-202ENST00000398452 PKP1Q13835 747 aa16.31■□□□□ 0.2
SKA1-202ENST00000398452 CATSPERGQ6ZRH7 1159 aa16.31■□□□□ 0.2
SKA1-202ENST00000398452 BRAPQ7Z569 592 aa16.31■□□□□ 0.2
SKA1-202ENST00000398452 DIS3L2Q8IYB7 885 aaKnown RBP16.31■□□□□ 0.2
SKA1-202ENST00000398452 MTMR8Q96EF0 704 aa16.31■□□□□ 0.2
SKA1-202ENST00000398452 RANBP17Q9H2T7 1088 aaKnown RBP16.31■□□□□ 0.2
SKA1-202ENST00000398452 FBXO28Q9NVF7 368 aa16.31■□□□□ 0.2
SKA1-202ENST00000398452 KCNJ14Q9UNX9 436 aa16.31■□□□□ 0.2
SKA1-202ENST00000398452 AGTPBP1Q9UPW5 1226 aa16.31■□□□□ 0.2
SKA1-202ENST00000398452 PCDHB13Q9Y5F0 798 aa16.31■□□□□ 0.2
SKA1-202ENST00000398452 OTOFQ9HC10 1997 aa16.31■□□□□ 0.2
SKA1-202ENST00000398452 CCL15-CCL14A0A0B4J2E2 113 aa16.3■□□□□ 0.2
SKA1-202ENST00000398452 SMCO2A6NFE2 343 aa16.3■□□□□ 0.2
SKA1-202ENST00000398452 STXBP3O00186 592 aa16.3■□□□□ 0.2
SKA1-202ENST00000398452 ADCY7P51828 1080 aa16.3■□□□□ 0.2
SKA1-202ENST00000398452 MRPL12P52815 198 aaKnown RBP16.3■□□□□ 0.2
SKA1-202ENST00000398452 CCL15Q16663 113 aa16.3■□□□□ 0.2
SKA1-202ENST00000398452 USH1GQ495M9 461 aa16.3■□□□□ 0.2
SKA1-202ENST00000398452 SPRYD7Q5W111 196 aa16.3■□□□□ 0.2
SKA1-202ENST00000398452 TNPO1Q92973 898 aaKnown RBP16.3■□□□□ 0.2
SKA1-202ENST00000398452 CUL5Q93034 780 aa16.3■□□□□ 0.2
SKA1-202ENST00000398452 COA7Q96BR5 231 aa16.3■□□□□ 0.2
SKA1-202ENST00000398452 ZNF396Q96N95 335 aaPredicted RBP16.3■□□□□ 0.2
SKA1-202ENST00000398452 PHF20Q9BVI0 1012 aa16.3■□□□□ 0.2
SKA1-202ENST00000398452 FOXP1Q9H334 677 aaPredicted RBP16.3■□□□□ 0.2
SKA1-202ENST00000398452 CCPG1Q9ULG6 757 aa16.3■□□□□ 0.2
SKA1-202ENST00000398452 PCDHA4Q9UN74 947 aa16.3■□□□□ 0.2
SKA1-202ENST00000398452 MRPL11Q9Y3B7 192 aaKnown RBP16.3■□□□□ 0.2
SKA1-202ENST00000398452 NCLP19338 710 aaKnown RBP16.29■□□□□ 0.2
SKA1-202ENST00000398452 HOXA7P31268 230 aaPredicted RBP16.29■□□□□ 0.2
SKA1-202ENST00000398452 SNAP25P60880 206 aa16.29■□□□□ 0.2
SKA1-202ENST00000398452 CSPP1Q1MSJ5 1256 aa16.29■□□□□ 0.2
SKA1-202ENST00000398452 SLC35G1Q2M3R5 365 aa16.29■□□□□ 0.2
SKA1-202ENST00000398452 BLIDQ8IZY5 108 aa16.29■□□□□ 0.2
SKA1-202ENST00000398452 CPXCR1Q8N123 301 aa16.29■□□□□ 0.2
SKA1-202ENST00000398452 MB21D1Q8N884 522 aa16.29■□□□□ 0.2
SKA1-202ENST00000398452 GTF3C2Q8WUA4 911 aaPredicted RBP16.29■□□□□ 0.2
SKA1-202ENST00000398452 NOL7Q9UMY1 257 aaKnown RBP16.29■□□□□ 0.2
SKA1-202ENST00000398452 MYH6P13533 1939 aa16.29■□□□□ 0.2
SKA1-202ENST00000398452 ABCB11O95342 1321 aa16.28■□□□□ 0.2
SKA1-202ENST00000398452 CCDC194A0A1B0GVG4 234 aa16.28■□□□□ 0.2
SKA1-202ENST00000398452 ESYT2A0FGR8 921 aa16.28■□□□□ 0.2
SKA1-202ENST00000398452 MANSC4A6NHS7 340 aaPredicted RBP16.28■□□□□ 0.2
SKA1-202ENST00000398452 ICAM1P05362 532 aa16.28■□□□□ 0.2
SKA1-202ENST00000398452 FOXD4L6Q3SYB3 417 aaPredicted RBP16.28■□□□□ 0.2
SKA1-202ENST00000398452 TREML2Q5T2D2 321 aa16.28■□□□□ 0.2
SKA1-202ENST00000398452 MCTP2Q6DN12 878 aa16.28■□□□□ 0.2
SKA1-202ENST00000398452 FOXD4L3Q6VB84 417 aaPredicted RBP16.28■□□□□ 0.2
SKA1-202ENST00000398452 MAMSTRQ6ZN01 415 aa16.28■□□□□ 0.2
SKA1-202ENST00000398452 ATG4CQ96DT6 458 aa16.28■□□□□ 0.2
SKA1-202ENST00000398452 PSTPIP2Q9H939 334 aa16.28■□□□□ 0.2
SKA1-202ENST00000398452 GJB4Q9NTQ9 266 aa16.28■□□□□ 0.2
SKA1-202ENST00000398452 VWA5AO00534 786 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 TBC1D8O95759 1140 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 OAZ1P54368 228 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 KRT85P78386 507 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 RESTQ13127 1097 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 PLS1Q14651 629 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 TEX2Q8IWB9 1127 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 REXO1Q8N1G1 1221 aaKnown RBP16.27■□□□□ 0.2
SKA1-202ENST00000398452 DAGLBQ8NCG7 672 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 SMCR8Q8TEV9 937 aaPredicted RBP16.27■□□□□ 0.2
SKA1-202ENST00000398452 ZMYND12Q9H0C1 365 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 SLC38A10Q9HBR0 1119 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 SAGE1Q9NXZ1 904 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 CFAP45Q9UL16 551 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 ZDHHC9Q9Y397 364 aa16.27■□□□□ 0.2
SKA1-202ENST00000398452 BAZ2BQ9UIF8 2168 aaKnown RBP16.27■□□□□ 0.19
SKA1-202ENST00000398452 TTLL13PA6NNM8 815 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 BTBD18B2RXH4 712 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 ALAS1P13196 640 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 GJA5P36382 358 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 INHBEP58166 350 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 SREBF2Q12772 1141 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 ATL3Q6DD88 541 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 KRT25Q7Z3Z0 450 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 ANKRD23Q86SG2 305 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 MCF2L2Q86YR7 1114 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 NOSTRINQ8IVI9 506 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 RAVER2Q9HCJ3 691 aaKnown RBP16.26■□□□□ 0.19
SKA1-202ENST00000398452 RIC8AQ9NPQ8 531 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 SLC45A1Q9Y2W3 748 aa16.26■□□□□ 0.19
SKA1-202ENST00000398452 PHIPQ8WWQ0 1821 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms