RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 ST3GAL1Q11201 340 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 MAP3K12Q12852 859 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 RCN2Q14257 317 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 RASGRP2Q7LDG7 609 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 KBTBD3Q8NAB2 608 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 LINS1Q8NG48 757 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 XAGE3Q8WTP9 111 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 TUBGCP2Q9BSJ2 902 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 EME2A4GXA9 379 aaPredicted RBP12.93□□□□□ -0.34
PTPN1-201ENST00000371621 ACTN4O43707 911 aaKnown RBP12.93□□□□□ -0.34
PTPN1-201ENST00000371621 KLC1Q07866 573 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 COL9A3Q14050 684 aaPredicted RBP12.93□□□□□ -0.34
PTPN1-201ENST00000371621 TNNI3KQ59H18 835 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 WDR93Q6P2C0 686 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 PIK3AP1Q6ZUJ8 805 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 DDX42Q86XP3 938 aaKnown RBP eCLIP12.93□□□□□ -0.34
PTPN1-201ENST00000371621 MYLK4Q86YV6 388 aaPredicted RBP12.93□□□□□ -0.34
PTPN1-201ENST00000371621 SYMPKQ92797 1274 aaKnown RBP12.93□□□□□ -0.34
PTPN1-201ENST00000371621 HAUS1Q96CS2 278 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 FAM53CQ9NYF3 392 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 FPGT-TNNI3KV9GXZ4 949 aa12.93□□□□□ -0.34
PTPN1-201ENST00000371621 TRAF5O00463 557 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 ALDH1L1O75891 902 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 EIF4A3P38919 411 aaKnown RBP12.92□□□□□ -0.34
PTPN1-201ENST00000371621 DNM2P50570 870 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 SLC39A6Q13433 755 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 MARCH10Q8NA82 808 aaPredicted RBP12.92□□□□□ -0.34
PTPN1-201ENST00000371621 NAP1L3Q99457 506 aaPredicted RBP12.92□□□□□ -0.34
PTPN1-201ENST00000371621 CFAP74Q9C0B2 1584 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 VAT1LQ9HCJ6 419 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 DNAJC17Q9NVM6 304 aaKnown RBP12.92□□□□□ -0.34
PTPN1-201ENST00000371621 ZFATQ9P243 1243 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 V9GY48 417 aaPredicted RBP12.92□□□□□ -0.34
PTPN1-201ENST00000371621 ZSCAN5CA6NGD5 496 aaPredicted RBP12.92□□□□□ -0.34
PTPN1-201ENST00000371621 PECAM1P16284 738 aaPredicted RBP12.92□□□□□ -0.34
PTPN1-201ENST00000371621 PRPHP41219 470 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 KLHL30Q0D2K2 578 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 CCDC77Q9BR77 488 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 PRDM15P57071 1507 aaPredicted RBP12.92□□□□□ -0.34
PTPN1-201ENST00000371621 TRIM49BA6NDI0 452 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 CCDC169A6NNP5 214 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 IGF2BP3O00425 579 aaKnown RBP eCLIP12.92□□□□□ -0.34
PTPN1-201ENST00000371621 FSBPO95073 299 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 ATP6V1G2O95670 118 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 CPP00450 1065 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 NBPF10Q6P3W6 841 aaKnown RBP12.92□□□□□ -0.34
PTPN1-201ENST00000371621 TRMT1LQ7Z2T5 733 aaKnown RBP12.92□□□□□ -0.34
PTPN1-201ENST00000371621 FBXO41Q8TF61 875 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 PRCCQ92733 491 aaPredicted RBP12.92□□□□□ -0.34
PTPN1-201ENST00000371621 UIMC1Q96RL1 719 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 EYA1Q99502 592 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 NUP58Q9BVL2 599 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 ZBTB3Q9H5J0 574 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 ZFYVE16Q7Z3T8 1539 aa12.92□□□□□ -0.34
PTPN1-201ENST00000371621 KIF28PB7ZC32 967 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 PYGLP06737 847 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 GJC1P36383 396 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 RCSD1Q6JBY9 416 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 CCDC174Q6PII3 467 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 TRIM74Q86UV6 250 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 TRIM73Q86UV7 250 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 ARPP21Q9UBL0 812 aaPredicted RBP12.91□□□□□ -0.34
PTPN1-201ENST00000371621 PPP1R9AQ9ULJ8 1098 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 KDM5AP29375 1690 aaKnown RBP12.91□□□□□ -0.34
PTPN1-201ENST00000371621 ERBB3P21860 1342 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 ABCB4P21439 1286 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 AMOTQ4VCS5 1084 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 PHLDB3Q6NSJ2 640 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 CATIPQ7Z7H3 387 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 TRIML1Q8N9V2 468 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 GDAQ9Y2T3 454 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 PCDHB6Q9Y5E3 794 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 TPD52L2O43399 206 aaKnown RBP12.91□□□□□ -0.34
PTPN1-201ENST00000371621 PRDM1O75626 825 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 CDC27P30260 824 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 UAP1Q16222 522 aaPredicted RBP12.91□□□□□ -0.34
PTPN1-201ENST00000371621 ANKRD20A3Q5VUR7 823 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 DYMQ7RTS9 669 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 ARHGAP22Q7Z5H3 698 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 PDCD7Q8N8D1 485 aaKnown RBP12.91□□□□□ -0.34
PTPN1-201ENST00000371621 DDX47Q9H0S4 455 aaKnown RBP12.91□□□□□ -0.34
PTPN1-201ENST00000371621 RBM12Q9NTZ6 932 aaKnown RBP12.91□□□□□ -0.34
PTPN1-201ENST00000371621 SH3BP1Q9Y3L3 701 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 PLXNC1O60486 1568 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 POLR1AO95602 1720 aaPredicted RBP12.91□□□□□ -0.34
PTPN1-201ENST00000371621 TARSL2A2RTX5 802 aaKnown RBP12.91□□□□□ -0.34
PTPN1-201ENST00000371621 GYPCP04921 128 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 KRT15P19012 456 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 DRP2Q13474 957 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 HS2ST1Q7LGA3 356 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 APBB1IPQ7Z5R6 666 aaPredicted RBP12.91□□□□□ -0.34
PTPN1-201ENST00000371621 CCDC65Q8IXS2 484 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 CCDC105Q8IYK2 499 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 IQSEC3Q9UPP2 1182 aaPredicted RBP12.91□□□□□ -0.34
PTPN1-201ENST00000371621 C15orf41Q9Y2V0 281 aa12.91□□□□□ -0.34
PTPN1-201ENST00000371621 FBXL5Q9UKA1 691 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 PNMA2Q9UL42 364 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 CHMP2BQ9UQN3 213 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 IQGAP3Q86VI3 1631 aa12.9□□□□□ -0.34
PTPN1-201ENST00000371621 BICDL2A1A5D9 508 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms