RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 RNF14Q9UBS8 474 aa12.91□□□□□ -0.34
COL9A1-202ENST00000357250 CPS1P31327 1500 aa12.91□□□□□ -0.34
COL9A1-202ENST00000357250 RGS16O15492 202 aaPredicted RBP12.91□□□□□ -0.34
COL9A1-202ENST00000357250 APBA3O96018 575 aa12.91□□□□□ -0.34
COL9A1-202ENST00000357250 MAN1A1P33908 653 aa12.91□□□□□ -0.34
COL9A1-202ENST00000357250 PHBP35232 272 aa12.91□□□□□ -0.34
COL9A1-202ENST00000357250 PTGDRQ13258 359 aa12.91□□□□□ -0.34
COL9A1-202ENST00000357250 USH1GQ495M9 461 aa12.91□□□□□ -0.34
COL9A1-202ENST00000357250 NSUN7Q8NE18 718 aaKnown RBP12.91□□□□□ -0.34
COL9A1-202ENST00000357250 MCUR1Q96AQ8 359 aa12.91□□□□□ -0.34
COL9A1-202ENST00000357250 CARMIL3Q8ND23 1372 aa12.91□□□□□ -0.34
COL9A1-202ENST00000357250 PTCH1Q13635 1447 aa12.91□□□□□ -0.34
COL9A1-202ENST00000357250 CYP21A2P08686 494 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 COPB1P53618 953 aaKnown RBP12.9□□□□□ -0.34
COL9A1-202ENST00000357250 MAP7Q14244 749 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 C17orf53Q8N3J3 647 aaPredicted RBP12.9□□□□□ -0.34
COL9A1-202ENST00000357250 U2AF1L4Q8WU68 220 aaKnown RBP12.9□□□□□ -0.34
COL9A1-202ENST00000357250 HAUS1Q96CS2 278 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 TRIM31Q9BZY9 425 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 TBC1D7Q9P0N9 293 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 ABCC12Q96J65 1359 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 HEG1Q9ULI3 1381 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 CLTCQ00610 1675 aaKnown RBP12.9□□□□□ -0.34
COL9A1-202ENST00000357250 CCDC160A6NGH7 325 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 GIPC1O14908 333 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 KRT15P19012 456 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 RNASE9P60153 205 aaKnown RBP12.9□□□□□ -0.34
COL9A1-202ENST00000357250 GTF2IP78347 998 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 HADHQ16836 314 aaKnown RBP12.9□□□□□ -0.34
COL9A1-202ENST00000357250 ZBTB8OSQ8IWT0 167 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 CCDC89Q8N998 374 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 NSMCE1Q8WV22 266 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 RNF34Q969K3 372 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 TEKT3Q9BXF9 490 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 STK17AQ9UEE5 414 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 SRP68Q9UHB9 627 aaKnown RBP12.9□□□□□ -0.34
COL9A1-202ENST00000357250 SERPINA10Q9UK55 444 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 USH1CQ9Y6N9 552 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 GAP43P17677 238 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 TNNI1P19237 187 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 SEPT2Q15019 361 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 FAM178BQ8IXR5 827 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 FAM71BQ8TC56 605 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 DDX25Q9UHL0 483 aaKnown RBP12.9□□□□□ -0.34
COL9A1-202ENST00000357250 CDC23Q9UJX2 597 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 RABGAP1Q9Y3P9 1069 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 PCDHA5Q9Y5H7 936 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 CAMSAP1Q5T5Y3 1602 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 IFNAR1P17181 557 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 POLR2BP30876 1174 aaKnown RBP12.9□□□□□ -0.34
COL9A1-202ENST00000357250 TPD52P55327 224 aaPredicted RBP12.9□□□□□ -0.34
COL9A1-202ENST00000357250 PPP1R21Q6ZMI0 780 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 NLRP10Q86W26 655 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 CPXCR1Q8N123 301 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 C1orf112Q9NSG2 853 aa12.9□□□□□ -0.34
COL9A1-202ENST00000357250 ERVV-1B6SEH8 477 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 PRPF6O94906 941 aaKnown RBP12.89□□□□□ -0.35
COL9A1-202ENST00000357250 HSPA1LP34931 641 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 TECP42680 631 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 CEP85LQ5SZL2 805 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 VCXQ9H320 206 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 XDHP47989 1333 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 KRIT1O00522 736 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 TROVE2P10155 538 aaKnown RBP eCLIP12.89□□□□□ -0.35
COL9A1-202ENST00000357250 CTNNA1P35221 906 aaKnown RBP12.89□□□□□ -0.35
COL9A1-202ENST00000357250 LIFRP42702 1097 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 NCAPD2Q15021 1401 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 ANKRD20A3Q5VUR7 823 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 SYMPKQ92797 1274 aaKnown RBP12.89□□□□□ -0.35
COL9A1-202ENST00000357250 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.89□□□□□ -0.35
COL9A1-202ENST00000357250 NEXMIFQ5QGS0 1516 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 PI4K2BQ8TCG2 481 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 ZBTB9Q96C00 473 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 SLC5A4Q9NY91 659 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 ZNF804BA4D1E1 1349 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 SLFN14P0C7P3 912 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 ADD2P35612 726 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 ARHGAP44Q17R89 818 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 CERKLQ49MI3 558 aaPredicted RBP12.89□□□□□ -0.35
COL9A1-202ENST00000357250 MAP3K21Q5TCX8 1036 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 FAM196AQ6ZSG2 479 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 PHLDB2Q86SQ0 1253 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 AMNQ9BXJ7 453 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 RAB20Q9NX57 234 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 PCDHA4Q9UN74 947 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 GJA3Q9Y6H8 435 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 LMTK2Q8IWU2 1503 aa12.89□□□□□ -0.35
COL9A1-202ENST00000357250 LARGE1O95461 756 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 ADAM9Q13443 819 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 POLA2Q14181 598 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 RASA3Q14644 834 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 ZYXQ15942 572 aaKnown RBP12.88□□□□□ -0.35
COL9A1-202ENST00000357250 GKAP1Q5VSY0 366 aaPredicted RBP12.88□□□□□ -0.35
COL9A1-202ENST00000357250 SDCCAG8Q86SQ7 713 aaPredicted RBP12.88□□□□□ -0.35
COL9A1-202ENST00000357250 CNKSR1Q969H4 720 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 TRIM11Q96F44 468 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 ZNF215Q9UL58 517 aaPredicted RBP12.88□□□□□ -0.35
COL9A1-202ENST00000357250 KCNK3O14649 394 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 CRCPO75575 148 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 LMNB1P20700 586 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms