RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 FAM160B1Q5W0V3 765 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 IMPACTQ9P2X3 320 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 LRRIQ4A6NIV6 560 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 DYNC1I1O14576 645 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 CAMTA2O94983 1202 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 CLCN1P35523 988 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 LSM14BQ9BX40 385 aaKnown RBP16.49■□□□□ 0.23
COL17A1-201ENST00000353479 MROH7-TTC4A0A0A0MT08 1334 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 DMP1Q13316 513 aaPredicted RBP16.48■□□□□ 0.23
COL17A1-201ENST00000353479 CUL4AQ13619 759 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 FAM26FQ5R3K3 315 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 DGKHQ86XP1 1220 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 TMTC1Q8IUR5 882 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 GPT2Q8TD30 523 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 PPP6R2O75170 966 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 TNNC1P63316 161 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 SLC44A5Q8NCS7 719 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 CTTNBP2NLQ9P2B4 639 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 SEPT9Q9UHD8 586 aaPredicted RBP16.48■□□□□ 0.23
COL17A1-201ENST00000353479 RNASE9P60153 205 aaKnown RBP16.48■□□□□ 0.23
COL17A1-201ENST00000353479 TTC14Q96N46 770 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 POLR3EQ9NVU0 708 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 ASNSP08243 561 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 DCP1AQ9NPI6 582 aaPredicted RBP16.48■□□□□ 0.23
COL17A1-201ENST00000353479 ADD3Q9UEY8 706 aaKnown RBP16.48■□□□□ 0.23
COL17A1-201ENST00000353479 PABPN1LA6NDY0 278 aaKnown RBP16.48■□□□□ 0.23
COL17A1-201ENST00000353479 MAGEA1P43355 309 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 ITPK1Q13572 414 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 ATG9AQ7Z3C6 839 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 CCDC77Q9BR77 488 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 RIPOR2Q9Y4F9 1068 aa16.48■□□□□ 0.23
COL17A1-201ENST00000353479 A0A1W2PQ27 194 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 A0A1W2PQ64 194 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 A0A1W2PQD8 194 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 SCARF1Q14162 830 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 SPECC1LQ69YQ0 1117 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 HACE1Q8IYU2 909 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 ZNF34Q8IZ26 560 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 HOXA13P31271 388 aaPredicted RBP16.47■□□□□ 0.23
COL17A1-201ENST00000353479 FAM160B2Q86V87 743 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 PROCA1Q8NCQ7 364 aaPredicted RBP16.47■□□□□ 0.23
COL17A1-201ENST00000353479 PPP1R14CQ8TAE6 165 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 SLC10A4Q96EP9 437 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 PNMA6FA0A0J9YX94 578 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 TYW1BQ6NUM6 668 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 CCDC25Q86WR0 208 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 TRIML1Q8N9V2 468 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 LARP4BQ92615 738 aaKnown RBP16.47■□□□□ 0.23
COL17A1-201ENST00000353479 ARMCX3Q9UH62 379 aaPredicted RBP16.47■□□□□ 0.23
COL17A1-201ENST00000353479 CD163L1Q9NR16 1453 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 NRXN1Q9ULB1 1477 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 RABL6Q3YEC7 729 aaPredicted RBP16.47■□□□□ 0.23
COL17A1-201ENST00000353479 ODR4Q5SWX8 454 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 PRR5LQ6MZQ0 368 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 EEPD1Q7L9B9 569 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 SLF1Q9BQI6 1058 aa16.47■□□□□ 0.23
COL17A1-201ENST00000353479 GCFC2P16383 781 aaKnown RBP16.46■□□□□ 0.23
COL17A1-201ENST00000353479 TICAM2Q86XR7 235 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 SECISBP2LQ93073 1101 aaKnown RBP16.46■□□□□ 0.23
COL17A1-201ENST00000353479 NAPGQ99747 312 aaPredicted RBP16.46■□□□□ 0.23
COL17A1-201ENST00000353479 NMT2O60551 498 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 ADKP55263 362 aaKnown RBP16.46■□□□□ 0.23
COL17A1-201ENST00000353479 CYB5R4Q7L1T6 521 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 ZBTB9Q96C00 473 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 RNF181Q9P0P0 153 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 USP17L5A8MUK1 530 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 RRP9O43818 475 aaKnown RBP16.46■□□□□ 0.23
COL17A1-201ENST00000353479 ARMCX5Q6P1M9 558 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 PLA2G12BQ9BX93 195 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 FAM107BQ9H098 131 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 TECPR2O15040 1411 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 TMOD1P28289 359 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 DCUN1D2Q6PH85 259 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 GOLGA5Q8TBA6 731 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 ATP6V0A1Q93050 837 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 IQCGQ9H095 443 aaKnown RBP16.46■□□□□ 0.23
COL17A1-201ENST00000353479 ABT1Q9ULW3 272 aaKnown RBP16.46■□□□□ 0.23
COL17A1-201ENST00000353479 USTQ9Y2C2 406 aa16.46■□□□□ 0.23
COL17A1-201ENST00000353479 CCND2P30279 289 aa16.46■□□□□ 0.22
COL17A1-201ENST00000353479 ADAM9Q13443 819 aa16.46■□□□□ 0.22
COL17A1-201ENST00000353479 SPOUT1Q5T280 376 aaKnown RBP16.46■□□□□ 0.22
COL17A1-201ENST00000353479 PLCD3Q8N3E9 789 aa16.46■□□□□ 0.22
COL17A1-201ENST00000353479 GJA10Q969M2 543 aa16.46■□□□□ 0.22
COL17A1-201ENST00000353479 A0A0G2JLW4 131 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 H0YCG3 227 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 CDC25AP30304 524 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 EEF2KMTQ96G04 330 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 FANCLQ9NW38 375 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 ANKFY1Q9P2R3 1169 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 COBLO75128 1261 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 DLATP10515 647 aaKnown RBP16.45■□□□□ 0.22
COL17A1-201ENST00000353479 SNX16P57768 344 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 CCDC117Q8IWD4 279 aaPredicted RBP16.45■□□□□ 0.22
COL17A1-201ENST00000353479 TMEM47Q9BQJ4 181 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 ADPGKQ9BRR6 497 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 ARHGAP6O43182 974 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 CCDC127Q96BQ5 260 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 AK8Q96MA6 479 aa16.45■□□□□ 0.22
COL17A1-201ENST00000353479 PAIP2Q9BPZ3 127 aaKnown RBP16.45■□□□□ 0.22
COL17A1-201ENST00000353479 PCDHA5Q9Y5H7 936 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms