RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 TCP1P17987 556 aaKnown RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 FBLN1P23142 703 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 POLD1P28340 1107 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 ATP1A2P50993 1020 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 PAPOLAP51003 745 aaKnown RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 MDM2Q00987 491 aaPredicted RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 FMR1Q06787 632 aaKnown RBP eCLIP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 MYO1EQ12965 1108 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 BIRC3Q13489 604 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 DSG2Q14126 1118 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 CCDC129Q6ZRS4 1044 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 GSPT2Q8IYD1 628 aaKnown RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 SLC16A10Q8TF71 515 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 CPLX3Q8WVH0 158 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 CNKSR1Q969H4 720 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 ARL8AQ96BM9 186 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 TBC1D31Q96DN5 1066 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 GDAP1L1Q96MZ0 367 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 ZIM3Q96PE6 472 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 BOLA2Q9H3K6 86 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 HELLSQ9NRZ9 838 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 SAMSN1Q9NSI8 373 aaKnown RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 RNF14Q9UBS8 474 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 DDX60Q8IY21 1712 aaKnown RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 ZNF609O15014 1411 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 RGPD8O14715 1765 aaPredicted RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 PPFIA2O75334 1257 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 IDEP14735 1019 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 PAFAH1B1P43034 410 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 MAGEA8P43361 318 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 ELF3P78545 371 aaPredicted RBP9.02□□□□□ -0.97
ATG4A-201ENST00000343524 GUCY1A3Q02108 690 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 BLMHQ13867 455 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 TRIM29Q14134 588 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 PDIA5Q14554 519 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 PTPAQ15257 358 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 IFI16Q16666 785 aaKnown RBP9.02□□□□□ -0.97
ATG4A-201ENST00000343524 PTPN21Q16825 1174 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 LONRF3Q496Y0 759 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 CCDC181Q5TID7 509 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 C8orf74Q6P047 294 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 ADGRD1Q6QNK2 874 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 RUFY4Q6ZNE9 571 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 EIF1ADQ8N9N8 165 aaKnown RBP9.02□□□□□ -0.97
ATG4A-201ENST00000343524 AIDAQ96BJ3 306 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 HVCN1Q96D96 273 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 CAPZA3Q96KX2 299 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 SEC62Q99442 399 aaKnown RBP9.02□□□□□ -0.97
ATG4A-201ENST00000343524 TSC22D3Q99576 134 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 SLF1Q9BQI6 1058 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 NCOA5Q9HCD5 579 aaKnown RBP9.02□□□□□ -0.97
ATG4A-201ENST00000343524 JADE2Q9NQC1 790 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 CWC25Q9NXE8 425 aaPredicted RBP9.02□□□□□ -0.97
ATG4A-201ENST00000343524 MIS18AQ9NYP9 233 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 LIMA1Q9UHB6 759 aaKnown RBP9.02□□□□□ -0.97
ATG4A-201ENST00000343524 BAIAP2L1Q9UHR4 511 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 SPEF2Q9C093 1822 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 C4AP0C0L4 1744 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 C4BP0C0L5 1744 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 ABCC12Q96J65 1359 aa9.02□□□□□ -0.97
ATG4A-201ENST00000343524 TRAPPC3O43617 180 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 HSPA1AP0DMV8 641 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 HSPA1BP0DMV9 641 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 BMP6P22004 513 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 MARCKSP29966 332 aaPredicted RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 CDC27P30260 824 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 KIF5BP33176 963 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 FXR1P51114 621 aaKnown RBP eCLIP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 HTRA3P83110 453 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 C2orf54Q08AI8 447 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 DYNC1I2Q13409 638 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 MTHFSDQ2M296 383 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 APTXQ7Z2E3 356 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 TRMT44Q8IYL2 757 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 CCDC63Q8NA47 563 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 SPATA20Q8TB22 786 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 MIPOL1Q8TD10 442 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 EAF2Q96CJ1 260 aaPredicted RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 IQCDQ96DY2 449 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 RRP36Q96EU6 259 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 C9orf78Q9NZ63 289 aaPredicted RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 RGL1Q9NZL6 768 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 TSKSQ9UJT2 592 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 A0A0U1RQJ8 604 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 GNAT3A8MTJ3 354 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 E7EWF7 191 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 BCL9O00512 1426 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 IFIT3O14879 490 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 TEX33O43247 280 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 TACC1O75410 805 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 SKAP2O75563 359 aaPredicted RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 TFRCP02786 760 aaKnown RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 IMPDH2P12268 514 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 IBSPP21815 317 aaPredicted RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 CCND1P24385 295 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 KRT9P35527 623 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 PSMD2Q13200 908 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 MTA1Q13330 715 aa9.01□□□□□ -0.97
ATG4A-201ENST00000343524 ITGB3BPQ13352 177 aaPredicted RBP9.01□□□□□ -0.97
ATG4A-201ENST00000343524 LAMB3Q13751 1172 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms