RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 SNX17Q15036 470 aa23.6■■□□□ 1.37
SYNE2-201ENST00000341472 TRIM60Q495X7 471 aa23.6■■□□□ 1.37
SYNE2-201ENST00000341472 C1orf53Q5VUE5 145 aa23.6■■□□□ 1.37
SYNE2-201ENST00000341472 KATNBL1Q9H079 304 aa23.6■■□□□ 1.37
SYNE2-201ENST00000341472 TNKSO95271 1327 aa23.59■■□□□ 1.37
SYNE2-201ENST00000341472 SYNRGQ9UMZ2 1314 aa23.59■■□□□ 1.37
SYNE2-201ENST00000341472 SGSM2O43147 1006 aa23.59■■□□□ 1.37
SYNE2-201ENST00000341472 ACLYP53396 1101 aa23.59■■□□□ 1.37
SYNE2-201ENST00000341472 KCNA10Q16322 511 aa23.59■■□□□ 1.37
SYNE2-201ENST00000341472 NOL8Q76FK4 1167 aaKnown RBP23.59■■□□□ 1.37
SYNE2-201ENST00000341472 CLEC4DQ8WXI8 215 aa23.59■■□□□ 1.37
SYNE2-201ENST00000341472 ADD3Q9UEY8 706 aaKnown RBP23.59■■□□□ 1.37
SYNE2-201ENST00000341472 PTPDC1A2A3K4 754 aa23.58■■□□□ 1.37
SYNE2-201ENST00000341472 NFIBO00712 420 aa23.58■■□□□ 1.37
SYNE2-201ENST00000341472 C6orf222P0C671 652 aaPredicted RBP23.58■■□□□ 1.37
SYNE2-201ENST00000341472 TNFAIP2Q03169 654 aa23.58■■□□□ 1.37
SYNE2-201ENST00000341472 TLE2Q04725 743 aa23.58■■□□□ 1.37
SYNE2-201ENST00000341472 ASPRV1Q53RT3 343 aa23.58■■□□□ 1.37
SYNE2-201ENST00000341472 IFIT1BQ5T764 474 aaKnown RBP23.58■■□□□ 1.37
SYNE2-201ENST00000341472 NUP133Q8WUM0 1156 aa23.58■■□□□ 1.37
SYNE2-201ENST00000341472 PURBQ96QR8 312 aaKnown RBP23.58■■□□□ 1.37
SYNE2-201ENST00000341472 CPVLQ9H3G5 476 aa23.58■■□□□ 1.37
SYNE2-201ENST00000341472 ZNFX1Q9P2E3 1918 aaKnown RBP23.58■■□□□ 1.37
SYNE2-201ENST00000341472 WDR19Q8NEZ3 1342 aa23.58■■□□□ 1.36
SYNE2-201ENST00000341472 A0A1W2PQ45 241 aaPredicted RBP23.57■■□□□ 1.36
SYNE2-201ENST00000341472 A0A1W2PQY0 241 aa23.57■■□□□ 1.36
SYNE2-201ENST00000341472 MOXD2PA6NHM9 499 aa23.57■■□□□ 1.36
SYNE2-201ENST00000341472 CYP21A2P08686 494 aa23.57■■□□□ 1.36
SYNE2-201ENST00000341472 PARP1P09874 1014 aaKnown RBP23.57■■□□□ 1.36
SYNE2-201ENST00000341472 GJA9P57773 515 aa23.57■■□□□ 1.36
SYNE2-201ENST00000341472 GNASQ5JWF2 1037 aa23.57■■□□□ 1.36
SYNE2-201ENST00000341472 IQSEC1Q6DN90 963 aa23.57■■□□□ 1.36
SYNE2-201ENST00000341472 CCSAPQ6IQ19 270 aaPredicted RBP23.57■■□□□ 1.36
SYNE2-201ENST00000341472 RNF207Q6ZRF8 634 aa23.57■■□□□ 1.36
SYNE2-201ENST00000341472 CYB5R4Q7L1T6 521 aa23.57■■□□□ 1.36
SYNE2-201ENST00000341472 PCSK9Q8NBP7 692 aaKnown RBP23.57■■□□□ 1.36
SYNE2-201ENST00000341472 PCDH10Q9P2E7 1040 aa23.57■■□□□ 1.36
SYNE2-201ENST00000341472 ASTN1O14525 1302 aa23.57■■□□□ 1.36
SYNE2-201ENST00000341472 ADCY6O43306 1168 aa23.56■■□□□ 1.36
SYNE2-201ENST00000341472 CALML3P27482 149 aa23.56■■□□□ 1.36
SYNE2-201ENST00000341472 ADGRF4Q8IZF3 695 aa23.56■■□□□ 1.36
SYNE2-201ENST00000341472 UPF3AQ9H1J1 476 aaKnown RBP23.56■■□□□ 1.36
SYNE2-201ENST00000341472 VAT1LQ9HCJ6 419 aa23.56■■□□□ 1.36
SYNE2-201ENST00000341472 PRDM5Q9NQX1 630 aaPredicted RBP23.56■■□□□ 1.36
SYNE2-201ENST00000341472 STARD7Q9NQZ5 370 aa23.56■■□□□ 1.36
SYNE2-201ENST00000341472 DDX49Q9Y6V7 483 aaKnown RBP23.56■■□□□ 1.36
SYNE2-201ENST00000341472 MYADML2A6NDP7 307 aa23.55■■□□□ 1.36
SYNE2-201ENST00000341472 CST5P28325 142 aaPredicted RBP23.55■■□□□ 1.36
SYNE2-201ENST00000341472 SEC23AQ15436 765 aa23.55■■□□□ 1.36
SYNE2-201ENST00000341472 KIAA1211Q6ZU35 1233 aa23.55■■□□□ 1.36
SYNE2-201ENST00000341472 EEPD1Q7L9B9 569 aa23.55■■□□□ 1.36
SYNE2-201ENST00000341472 TDHQ8IZJ6 230 aa23.55■■□□□ 1.36
SYNE2-201ENST00000341472 MORC4Q8TE76 937 aa23.55■■□□□ 1.36
SYNE2-201ENST00000341472 MAP4K1Q92918 833 aa23.55■■□□□ 1.36
SYNE2-201ENST00000341472 VTI1AQ96AJ9 217 aa23.55■■□□□ 1.36
SYNE2-201ENST00000341472 LOC102724159A0A0B4J2E5 919 aa23.54■■□□□ 1.36
SYNE2-201ENST00000341472 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.54■■□□□ 1.36
SYNE2-201ENST00000341472 DHX16O60231 1041 aaKnown RBP23.54■■□□□ 1.36
SYNE2-201ENST00000341472 RPS6P62753 249 aaKnown RBP23.54■■□□□ 1.36
SYNE2-201ENST00000341472 IRX5P78411 483 aaPredicted RBP23.54■■□□□ 1.36
SYNE2-201ENST00000341472 PWP2Q15269 919 aaKnown RBP23.54■■□□□ 1.36
SYNE2-201ENST00000341472 CDC37Q16543 378 aaPredicted RBP23.54■■□□□ 1.36
SYNE2-201ENST00000341472 USH1GQ495M9 461 aa23.54■■□□□ 1.36
SYNE2-201ENST00000341472 TAPT1Q6NXT6 567 aa23.54■■□□□ 1.36
SYNE2-201ENST00000341472 RALYLQ86SE5 291 aaKnown RBP23.54■■□□□ 1.36
SYNE2-201ENST00000341472 RGS22Q8NE09 1264 aa23.54■■□□□ 1.36
SYNE2-201ENST00000341472 GLT1D1Q96MS3 346 aa23.54■■□□□ 1.36
SYNE2-201ENST00000341472 AP5M1Q9H0R1 490 aa23.54■■□□□ 1.36
SYNE2-201ENST00000341472 VTA1Q9NP79 307 aa23.54■■□□□ 1.36
SYNE2-201ENST00000341472 PDGFCQ9NRA1 345 aa23.54■■□□□ 1.36
SYNE2-201ENST00000341472 SMCHD1A6NHR9 2005 aa23.54■■□□□ 1.36
SYNE2-201ENST00000341472 E7EWF7 191 aa23.53■■□□□ 1.36
SYNE2-201ENST00000341472 IFIT3O14879 490 aaKnown RBP23.53■■□□□ 1.36
SYNE2-201ENST00000341472 DYNC1LI2O43237 492 aaPredicted RBP23.53■■□□□ 1.36
SYNE2-201ENST00000341472 ASGR1P07306 291 aa23.53■■□□□ 1.36
SYNE2-201ENST00000341472 ALDH5A1P51649 535 aaPredicted RBP23.53■■□□□ 1.36
SYNE2-201ENST00000341472 NKX3-2P78367 333 aa23.53■■□□□ 1.36
SYNE2-201ENST00000341472 CENPQQ7L2Z9 268 aaPredicted RBP23.53■■□□□ 1.36
SYNE2-201ENST00000341472 NCOA7Q8NI08 942 aa23.53■■□□□ 1.36
SYNE2-201ENST00000341472 GNEQ9Y223 722 aaKnown RBP23.53■■□□□ 1.36
SYNE2-201ENST00000341472 ELP1O95163 1332 aa23.53■■□□□ 1.36
SYNE2-201ENST00000341472 ERICH2A1L162 156 aa23.52■■□□□ 1.36
SYNE2-201ENST00000341472 PQBP1O60828 265 aaKnown RBP23.52■■□□□ 1.36
SYNE2-201ENST00000341472 SMPD1P17405 629 aa23.52■■□□□ 1.36
SYNE2-201ENST00000341472 SLC30A10Q6XR72 485 aa23.52■■□□□ 1.36
SYNE2-201ENST00000341472 SH3RF1Q7Z6J0 888 aa23.52■■□□□ 1.36
SYNE2-201ENST00000341472 FBXO16Q8IX29 292 aaPredicted RBP23.52■■□□□ 1.36
SYNE2-201ENST00000341472 MPHOSPH6Q99547 160 aaKnown RBP23.52■■□□□ 1.36
SYNE2-201ENST00000341472 JMJD4Q9H9V9 463 aa23.52■■□□□ 1.36
SYNE2-201ENST00000341472 PDLIM7Q9NR12 457 aa23.52■■□□□ 1.36
SYNE2-201ENST00000341472 TRIM43BA6NCK2 446 aa23.51■■□□□ 1.35
SYNE2-201ENST00000341472 DCDC2CA8MYV0 355 aa23.51■■□□□ 1.35
SYNE2-201ENST00000341472 SOX1O00570 391 aaPredicted RBP23.51■■□□□ 1.35
SYNE2-201ENST00000341472 SART3Q15020 963 aaKnown RBP23.51■■□□□ 1.35
SYNE2-201ENST00000341472 LRIT3Q3SXY7 679 aa23.51■■□□□ 1.35
SYNE2-201ENST00000341472 ANKRD33Q7Z3H0 272 aa23.51■■□□□ 1.35
SYNE2-201ENST00000341472 TRIM43Q96BQ3 446 aaPredicted RBP23.51■■□□□ 1.35
SYNE2-201ENST00000341472 TOX2Q96NM4 488 aa23.51■■□□□ 1.35
SYNE2-201ENST00000341472 MAF1Q9H063 256 aa23.51■■□□□ 1.35
SYNE2-201ENST00000341472 Q9Y3F1 56 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms