RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 ASPRV1Q53RT3 343 aa18.78■□□□□ 0.6
HDDC2-201ENST00000318787 ARMCX2Q7L311 632 aa18.78■□□□□ 0.6
HDDC2-201ENST00000318787 CCDC144CPQ8IYA2 1237 aa18.78■□□□□ 0.6
HDDC2-201ENST00000318787 LSG1Q9H089 658 aaKnown RBP18.78■□□□□ 0.6
HDDC2-201ENST00000318787 ZMYND8Q9ULU4 1186 aaPredicted RBP18.78■□□□□ 0.6
HDDC2-201ENST00000318787 DDX49Q9Y6V7 483 aaKnown RBP18.78■□□□□ 0.6
HDDC2-201ENST00000318787 SNAI1O95863 264 aaPredicted RBP18.77■□□□□ 0.6
HDDC2-201ENST00000318787 ZNF865P0CJ78 1059 aaPredicted RBP18.77■□□□□ 0.6
HDDC2-201ENST00000318787 CALML3P27482 149 aa18.77■□□□□ 0.6
HDDC2-201ENST00000318787 SEC23AQ15436 765 aa18.77■□□□□ 0.6
HDDC2-201ENST00000318787 CDC37Q16543 378 aaPredicted RBP18.77■□□□□ 0.6
HDDC2-201ENST00000318787 TMEM67Q5HYA8 995 aa18.77■□□□□ 0.6
HDDC2-201ENST00000318787 HABP4Q5JVS0 413 aaKnown RBP18.77■□□□□ 0.6
HDDC2-201ENST00000318787 CHRDL2Q6WN34 429 aa18.77■□□□□ 0.6
HDDC2-201ENST00000318787 ADGRF4Q8IZF3 695 aa18.77■□□□□ 0.6
HDDC2-201ENST00000318787 MSL3Q8N5Y2 521 aaKnown RBP18.77■□□□□ 0.6
HDDC2-201ENST00000318787 ANKS1AQ92625 1134 aa18.77■□□□□ 0.6
HDDC2-201ENST00000318787 FERMT2Q96AC1 680 aa18.77■□□□□ 0.6
HDDC2-201ENST00000318787 FGD4Q96M96 766 aa18.77■□□□□ 0.6
HDDC2-201ENST00000318787 PURBQ96QR8 312 aaKnown RBP18.77■□□□□ 0.6
HDDC2-201ENST00000318787 CYP39A1Q9NYL5 469 aa18.77■□□□□ 0.6
HDDC2-201ENST00000318787 NRBP1Q9UHY1 535 aa18.77■□□□□ 0.6
HDDC2-201ENST00000318787 SOWAHBA6NEL2 793 aa18.76■□□□□ 0.59
HDDC2-201ENST00000318787 CDC45O75419 566 aa18.76■□□□□ 0.59
HDDC2-201ENST00000318787 SYN1P17600 705 aa18.76■□□□□ 0.59
HDDC2-201ENST00000318787 ACVR2BQ13705 512 aa18.76■□□□□ 0.59
HDDC2-201ENST00000318787 BAATQ14032 418 aaPredicted RBP18.76■□□□□ 0.59
HDDC2-201ENST00000318787 LRRC26Q2I0M4 334 aa18.76■□□□□ 0.59
HDDC2-201ENST00000318787 MAMDC4Q6UXC1 1216 aa18.76■□□□□ 0.59
HDDC2-201ENST00000318787 NOL8Q76FK4 1167 aaKnown RBP18.76■□□□□ 0.59
HDDC2-201ENST00000318787 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.76■□□□□ 0.59
HDDC2-201ENST00000318787 EEPD1Q7L9B9 569 aa18.76■□□□□ 0.59
HDDC2-201ENST00000318787 ZNF467Q7Z7K2 595 aaPredicted RBP18.76■□□□□ 0.59
HDDC2-201ENST00000318787 FAM133AQ8N9E0 248 aa18.76■□□□□ 0.59
HDDC2-201ENST00000318787 FAM184BQ9ULE4 1060 aa18.76■□□□□ 0.59
HDDC2-201ENST00000318787 COL6A1P12109 1028 aa18.75■□□□□ 0.59
HDDC2-201ENST00000318787 LRRC41Q15345 812 aa18.75■□□□□ 0.59
HDDC2-201ENST00000318787 STAG2Q8N3U4 1231 aa18.75■□□□□ 0.59
HDDC2-201ENST00000318787 ABHD16BQ9H3Z7 469 aa18.75■□□□□ 0.59
HDDC2-201ENST00000318787 SENP2Q9HC62 589 aa18.75■□□□□ 0.59
HDDC2-201ENST00000318787 PCDH10Q9P2E7 1040 aa18.75■□□□□ 0.59
HDDC2-201ENST00000318787 COLQQ9Y215 455 aaPredicted RBP18.75■□□□□ 0.59
HDDC2-201ENST00000318787 ASB14A6NK59 587 aa18.74■□□□□ 0.59
HDDC2-201ENST00000318787 SLC27A2O14975 620 aa18.74■□□□□ 0.59
HDDC2-201ENST00000318787 ATXN8OSP0DMR3 200 aa18.74■□□□□ 0.59
HDDC2-201ENST00000318787 ADCYAP1R1P41586 468 aa18.74■□□□□ 0.59
HDDC2-201ENST00000318787 CCDC144BQ3MJ40 725 aa18.74■□□□□ 0.59
HDDC2-201ENST00000318787 CREB3L3Q68CJ9 461 aa18.74■□□□□ 0.59
HDDC2-201ENST00000318787 SLC30A10Q6XR72 485 aa18.74■□□□□ 0.59
HDDC2-201ENST00000318787 RNF207Q6ZRF8 634 aa18.74■□□□□ 0.59
HDDC2-201ENST00000318787 RNF180Q86T96 592 aa18.74■□□□□ 0.59
HDDC2-201ENST00000318787 NUP133Q8WUM0 1156 aa18.74■□□□□ 0.59
HDDC2-201ENST00000318787 BAZ2BQ9UIF8 2168 aaKnown RBP18.74■□□□□ 0.59
HDDC2-201ENST00000318787 KLRF2D3W0D1 207 aa18.73■□□□□ 0.59
HDDC2-201ENST00000318787 CENPBP07199 599 aaPredicted RBP18.73■□□□□ 0.59
HDDC2-201ENST00000318787 QRICH1Q2TAL8 776 aa18.73■□□□□ 0.59
HDDC2-201ENST00000318787 NFXL1Q6ZNB6 911 aa18.73■□□□□ 0.59
HDDC2-201ENST00000318787 HOMER1Q86YM7 354 aa18.73■□□□□ 0.59
HDDC2-201ENST00000318787 MB21D2Q8IYB1 491 aaPredicted RBP18.73■□□□□ 0.59
HDDC2-201ENST00000318787 PNMA2Q9UL42 364 aa18.73■□□□□ 0.59
HDDC2-201ENST00000318787 ATP11BQ9Y2G3 1177 aa18.73■□□□□ 0.59
HDDC2-201ENST00000318787 WDR19Q8NEZ3 1342 aa18.73■□□□□ 0.59
HDDC2-201ENST00000318787 SYNRGQ9UMZ2 1314 aa18.73■□□□□ 0.59
HDDC2-201ENST00000318787 PRC1O43663 620 aa18.72■□□□□ 0.59
HDDC2-201ENST00000318787 C6orf222P0C671 652 aaPredicted RBP18.72■□□□□ 0.59
HDDC2-201ENST00000318787 ANTXR2P58335 489 aa18.72■□□□□ 0.59
HDDC2-201ENST00000318787 CATIPQ7Z7H3 387 aa18.72■□□□□ 0.59
HDDC2-201ENST00000318787 FBXO11Q86XK2 927 aa18.72■□□□□ 0.59
HDDC2-201ENST00000318787 FBXO16Q8IX29 292 aaPredicted RBP18.72■□□□□ 0.59
HDDC2-201ENST00000318787 CLEC4DQ8WXI8 215 aa18.72■□□□□ 0.59
HDDC2-201ENST00000318787 PIBF1Q8WXW3 757 aa18.72■□□□□ 0.59
HDDC2-201ENST00000318787 ADD3Q9UEY8 706 aaKnown RBP18.72■□□□□ 0.59
HDDC2-201ENST00000318787 ASTN1O14525 1302 aa18.72■□□□□ 0.59
HDDC2-201ENST00000318787 ALDH5A1P51649 535 aaPredicted RBP18.71■□□□□ 0.59
HDDC2-201ENST00000318787 RNF20Q5VTR2 975 aa18.71■□□□□ 0.59
HDDC2-201ENST00000318787 MYL10Q9BUA6 226 aa18.71■□□□□ 0.59
HDDC2-201ENST00000318787 JMJD4Q9H9V9 463 aa18.71■□□□□ 0.59
HDDC2-201ENST00000318787 GPHNQ9NQX3 736 aaPredicted RBP18.71■□□□□ 0.59
HDDC2-201ENST00000318787 MAD2L2Q9UI95 211 aa18.71■□□□□ 0.59
HDDC2-201ENST00000318787 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.7■□□□□ 0.58
HDDC2-201ENST00000318787 ADCY6O43306 1168 aa18.7■□□□□ 0.58
HDDC2-201ENST00000318787 MCM5P33992 734 aa18.7■□□□□ 0.58
HDDC2-201ENST00000318787 RTP1P59025 263 aa18.7■□□□□ 0.58
HDDC2-201ENST00000318787 RPS6P62753 249 aaKnown RBP18.7■□□□□ 0.58
HDDC2-201ENST00000318787 LRRC2Q9BYS8 371 aa18.7■□□□□ 0.58
HDDC2-201ENST00000318787 SPC25Q9HBM1 224 aa18.7■□□□□ 0.58
HDDC2-201ENST00000318787 ABCB11O95342 1321 aa18.7■□□□□ 0.58
HDDC2-201ENST00000318787 TRIOBPQ9H2D6 2365 aa18.7■□□□□ 0.58
HDDC2-201ENST00000318787 RANBP2P49792 3224 aaKnown RBP18.7■□□□□ 0.58
HDDC2-201ENST00000318787 CCDC69A6NI79 296 aa18.69■□□□□ 0.58
HDDC2-201ENST00000318787 IRX5P78411 483 aaPredicted RBP18.69■□□□□ 0.58
HDDC2-201ENST00000318787 TNFAIP2Q03169 654 aa18.69■□□□□ 0.58
HDDC2-201ENST00000318787 GRM4Q14833 912 aa18.69■□□□□ 0.58
HDDC2-201ENST00000318787 NECTIN1Q15223 517 aa18.69■□□□□ 0.58
HDDC2-201ENST00000318787 PRDM5Q9NQX1 630 aaPredicted RBP18.69■□□□□ 0.58
HDDC2-201ENST00000318787 PALM3A6NDB9 673 aaPredicted RBP18.68■□□□□ 0.58
HDDC2-201ENST00000318787 MYADML2A6NDP7 307 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 ADAMTS4O75173 837 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 DUSP11O75319 330 aaKnown RBP18.68■□□□□ 0.58
HDDC2-201ENST00000318787 PDE4DQ08499 809 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms