RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 MMP19Q99542 508 aa20.69■□□□□ 0.9
SSSCA1-201ENST00000309328 SRRDQ9UH36 339 aa20.69■□□□□ 0.9
SSSCA1-201ENST00000309328 PCDHA1Q9Y5I3 950 aa20.69■□□□□ 0.9
SSSCA1-201ENST00000309328 XRCC5P13010 732 aaKnown RBP20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 RGS2P41220 211 aa20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 SCRN1Q12765 414 aa20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 STK3Q13188 491 aa20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 NTRK3Q16288 839 aa20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 SLC35G1Q2M3R5 365 aa20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 MORN1Q5T089 497 aa20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 PPP1R18Q6NYC8 613 aa20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 OTOP1Q7RTM1 612 aa20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 ANKRD35Q8N283 1001 aa20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 CCDC12Q8WUD4 166 aaPredicted RBP20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 LLPHQ9BRT6 129 aaKnown RBP20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 GLT8D2Q9H1C3 349 aa20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 RIPK3Q9Y572 518 aa20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 TRIM17Q9Y577 477 aa20.68■□□□□ 0.9
SSSCA1-201ENST00000309328 PEX10O60683 326 aa20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 SNAP25P60880 206 aa20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 SSRP1Q08945 709 aaKnown RBP20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 IRF5Q13568 498 aa20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 NOL8Q76FK4 1167 aaKnown RBP20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 CCDC82Q8N4S0 544 aa20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 WASF1Q92558 559 aa20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 LARP6Q9BRS8 491 aaKnown RBP20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 NCOA5Q9HCD5 579 aaKnown RBP20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 HOMER2Q9NSB8 354 aa20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 DIS3Q9Y2L1 958 aaKnown RBP20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 V9GY48 417 aaPredicted RBP20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 STK36Q9NRP7 1315 aa20.67■□□□□ 0.9
SSSCA1-201ENST00000309328 DEXIO95424 95 aa20.66■□□□□ 0.9
SSSCA1-201ENST00000309328 HOXC6P09630 235 aa20.66■□□□□ 0.9
SSSCA1-201ENST00000309328 SLC4A3P48751 1232 aa20.66■□□□□ 0.9
SSSCA1-201ENST00000309328 PFKFB3Q16875 520 aaPredicted RBP20.66■□□□□ 0.9
SSSCA1-201ENST00000309328 USH1GQ495M9 461 aa20.66■□□□□ 0.9
SSSCA1-201ENST00000309328 CMTR1Q8N1G2 835 aaKnown RBP20.66■□□□□ 0.9
SSSCA1-201ENST00000309328 DDX11Q96FC9 970 aa20.66■□□□□ 0.9
SSSCA1-201ENST00000309328 APBA2Q99767 749 aa20.66■□□□□ 0.9
SSSCA1-201ENST00000309328 ARHGAP39Q9C0H5 1083 aa20.66■□□□□ 0.9
SSSCA1-201ENST00000309328 LOC102724159A0A0B4J2E5 919 aa20.65■□□□□ 0.9
SSSCA1-201ENST00000309328 SCG2P13521 617 aa20.65■□□□□ 0.9
SSSCA1-201ENST00000309328 ADORA2AP29274 412 aa20.65■□□□□ 0.9
SSSCA1-201ENST00000309328 CTGFP29279 349 aa20.65■□□□□ 0.9
SSSCA1-201ENST00000309328 MAP2K5Q13163 448 aa20.65■□□□□ 0.9
SSSCA1-201ENST00000309328 PWP2Q15269 919 aaKnown RBP20.65■□□□□ 0.9
SSSCA1-201ENST00000309328 DPP9Q86TI2 863 aa20.65■□□□□ 0.9
SSSCA1-201ENST00000309328 USP6NLQ92738 828 aa20.65■□□□□ 0.9
SSSCA1-201ENST00000309328 SLC26A6Q9BXS9 759 aa20.65■□□□□ 0.9
SSSCA1-201ENST00000309328 GJD2Q9UKL4 321 aa20.65■□□□□ 0.9
SSSCA1-201ENST00000309328 XBP1P17861 261 aa20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 FLT3LGP49771 235 aa20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 HMGN5P82970 282 aaKnown RBP20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 GHRHRQ02643 423 aa20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 HEATR3Q7Z4Q2 680 aa20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 MSL3Q8N5Y2 521 aaKnown RBP20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 CCDC148Q8NFR7 591 aa20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 RAET1EQ8TD07 263 aa20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 PXYLP1Q8TE99 480 aa20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 CLEC4DQ8WXI8 215 aa20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 SNX21Q969T3 373 aa20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 MPHOSPH6Q99547 160 aaKnown RBP20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 A1CFQ9NQ94 594 aaKnown RBP20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 SH3GLB2Q9NR46 395 aa20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 BARHL2Q9NY43 387 aa20.64■□□□□ 0.89
SSSCA1-201ENST00000309328 PPP1R11O60927 126 aaPredicted RBP20.63■□□□□ 0.89
SSSCA1-201ENST00000309328 PRKCZQ05513 592 aa20.63■□□□□ 0.89
SSSCA1-201ENST00000309328 FBXO46Q6PJ61 603 aaPredicted RBP20.63■□□□□ 0.89
SSSCA1-201ENST00000309328 RNF207Q6ZRF8 634 aa20.63■□□□□ 0.89
SSSCA1-201ENST00000309328 ZNF467Q7Z7K2 595 aaPredicted RBP20.63■□□□□ 0.89
SSSCA1-201ENST00000309328 PIBF1Q8WXW3 757 aa20.63■□□□□ 0.89
SSSCA1-201ENST00000309328 PHKBQ93100 1093 aa20.63■□□□□ 0.89
SSSCA1-201ENST00000309328 ADD3Q9UEY8 706 aaKnown RBP20.63■□□□□ 0.89
SSSCA1-201ENST00000309328 PTPN22Q9Y2R2 807 aa20.63■□□□□ 0.89
SSSCA1-201ENST00000309328 KIF3AQ9Y496 699 aa20.63■□□□□ 0.89
SSSCA1-201ENST00000309328 ZNF236Q9UL36 1845 aa20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 DNAJC25-GNG10A0A024R161 153 aa20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 B4DLN1 442 aa20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 POTEB2H3BUK9 544 aa20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 MRPL12P52815 198 aaKnown RBP20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 MUM1L1Q5H9M0 696 aa20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 MCTP2Q6DN12 878 aa20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 NSMFQ6X4W1 530 aa20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 NECAB1Q8N987 351 aa20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 SLAIN1Q8ND83 568 aa20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 CUL5Q93034 780 aa20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 TMX3Q96JJ7 454 aa20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 CYP39A1Q9NYL5 469 aa20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 COL11A1P12107 1806 aaPredicted RBP20.62■□□□□ 0.89
SSSCA1-201ENST00000309328 ESYT2A0FGR8 921 aa20.61■□□□□ 0.89
SSSCA1-201ENST00000309328 PTPDC1A2A3K4 754 aa20.61■□□□□ 0.89
SSSCA1-201ENST00000309328 GCOM1H8Y6P7 765 aaPredicted RBP20.61■□□□□ 0.89
SSSCA1-201ENST00000309328 PIK3CDO00329 1044 aa20.61■□□□□ 0.89
SSSCA1-201ENST00000309328 NFIBO00712 420 aa20.61■□□□□ 0.89
SSSCA1-201ENST00000309328 LARGE1O95461 756 aa20.61■□□□□ 0.89
SSSCA1-201ENST00000309328 POLR2MP0CAP2 368 aa20.61■□□□□ 0.89
SSSCA1-201ENST00000309328 NAPAP54920 295 aa20.61■□□□□ 0.89
SSSCA1-201ENST00000309328 OLFML2BQ68BL8 750 aa20.61■□□□□ 0.89
SSSCA1-201ENST00000309328 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.61■□□□□ 0.89
SSSCA1-201ENST00000309328 GNA11P29992 359 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms