RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 TRIM65Q6PJ69 517 aa12.18□□□□□ -0.46
LSM3-201ENST00000306024 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.18□□□□□ -0.46
LSM3-201ENST00000306024 GOLGA6BA6NDN3 693 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 FAM196BA6NMK8 535 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 TMEM232C9JQI7 657 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 AKR1B15C9JRZ8 316 aaPredicted RBP12.17□□□□□ -0.46
LSM3-201ENST00000306024 CALM1P0DP23 149 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 CALM2P0DP24 149 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 CALM3P0DP25 149 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 VSNL1P62760 191 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 BEND6Q5SZJ8 279 aaPredicted RBP12.17□□□□□ -0.46
LSM3-201ENST00000306024 ADALQ6DHV7 355 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 SWT1Q5T5J6 900 aaKnown RBP12.17□□□□□ -0.46
LSM3-201ENST00000306024 SPECC1LQ69YQ0 1117 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 ALG1Q9BT22 464 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.17□□□□□ -0.46
LSM3-201ENST00000306024 C4AP0C0L4 1744 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 APOA5Q6Q788 366 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 IGSF22Q8N9C0 903 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 PHKBQ93100 1093 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 DHX36Q9H2U1 1008 aaKnown RBP12.17□□□□□ -0.46
LSM3-201ENST00000306024 PI4KBQ9UBF8 816 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 SERPINA10Q9UK55 444 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 RREB1Q92766 1687 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 SPEF2Q9C093 1822 aa12.17□□□□□ -0.46
LSM3-201ENST00000306024 SH2B2O14492 632 aaPredicted RBP12.16□□□□□ -0.46
LSM3-201ENST00000306024 PFKFB2O60825 505 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 SCP2P22307 547 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 GMPSP49915 693 aaPredicted RBP12.16□□□□□ -0.46
LSM3-201ENST00000306024 PLCD1P51178 756 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 SCRN1Q12765 414 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 PRKG1Q13976 671 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 CERKLQ49MI3 558 aaPredicted RBP12.16□□□□□ -0.46
LSM3-201ENST00000306024 VSTM4Q8IW00 320 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 MICALL2Q8IY33 904 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 KCNB2Q92953 911 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 PRMT6Q96LA8 375 aaPredicted RBP12.16□□□□□ -0.46
LSM3-201ENST00000306024 KCND1Q9NSA2 647 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 SEC63Q9UGP8 760 aaKnown RBP12.16□□□□□ -0.46
LSM3-201ENST00000306024 CNOT7Q9UIV1 285 aaKnown RBP12.16□□□□□ -0.46
LSM3-201ENST00000306024 GUCA1BQ9UMX6 200 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 LMNB1P20700 586 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 GCKP35557 465 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 NFIAQ12857 509 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 TUBB2AQ13885 445 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 DPF2Q92785 391 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 SYT17Q9BSW7 474 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 TUBB2BQ9BVA1 445 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 ARHGAP25P42331 645 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 SSR1P43307 286 aaKnown RBP12.16□□□□□ -0.46
LSM3-201ENST00000306024 HDLBPQ00341 1268 aaKnown RBP12.16□□□□□ -0.46
LSM3-201ENST00000306024 RSRC2Q7L4I2 434 aaKnown RBP12.16□□□□□ -0.46
LSM3-201ENST00000306024 CMTR1Q8N1G2 835 aaKnown RBP12.16□□□□□ -0.46
LSM3-201ENST00000306024 SLC35F6Q8N357 371 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 C7orf43Q8WVR3 580 aa12.16□□□□□ -0.46
LSM3-201ENST00000306024 C10orf71Q711Q0 1435 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 CHUKO15111 745 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 OPA1O60313 960 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 ZMYND10O75800 440 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 PEX19P40855 299 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 MATR3P43243 847 aaKnown RBP eCLIP12.15□□□□□ -0.46
LSM3-201ENST00000306024 GNAQP50148 359 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 ST3GAL1Q11201 340 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 LONRF3Q496Y0 759 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 IQCEQ6IPM2 695 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 KIAA1328Q86T90 577 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 PNMA1Q8ND90 353 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 AGBL3Q8NEM8 1001 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 ZDHHC15Q96MV8 337 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 NUP88Q99567 741 aaPredicted RBP12.15□□□□□ -0.46
LSM3-201ENST00000306024 HINFPQ9BQA5 517 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 SCAF8Q9UPN6 1271 aaKnown RBP12.15□□□□□ -0.46
LSM3-201ENST00000306024 DDX60Q8IY21 1712 aaKnown RBP12.15□□□□□ -0.46
LSM3-201ENST00000306024 NMT2O60551 498 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 ELF1P32519 619 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 EXOSC10Q01780 885 aaKnown RBP12.15□□□□□ -0.46
LSM3-201ENST00000306024 SBK1Q52WX2 424 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 EAPPQ56P03 285 aaPredicted RBP12.15□□□□□ -0.46
LSM3-201ENST00000306024 MIGA2Q7L4E1 593 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 ZNF384Q8TF68 577 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 RIN2Q8WYP3 895 aaPredicted RBP12.15□□□□□ -0.46
LSM3-201ENST00000306024 FAM163AQ96GL9 167 aaPredicted RBP12.15□□□□□ -0.46
LSM3-201ENST00000306024 PNKPQ96T60 521 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 LLPHQ9BRT6 129 aaKnown RBP12.15□□□□□ -0.46
LSM3-201ENST00000306024 NFE2L3Q9Y4A8 694 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 COL1A1P02452 1464 aaPredicted RBP12.15□□□□□ -0.46
LSM3-201ENST00000306024 FANCBQ8NB91 859 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 PCMTD1Q96MG8 357 aaPredicted RBP12.15□□□□□ -0.46
LSM3-201ENST00000306024 PLCD4Q9BRC7 762 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 L1RE1Q9UN81 338 aa12.15□□□□□ -0.46
LSM3-201ENST00000306024 YDJCA8MPS7 323 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 IKBKBO14920 756 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 GDF11O95390 407 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 WHAMMP3Q1A5X7 153 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 FKBP15Q5T1M5 1219 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 CCDC121Q6ZUS5 278 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 SAMD7Q7Z3H4 446 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 VPS33BQ9H267 617 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 SWAP70Q9UH65 585 aa12.14□□□□□ -0.47
LSM3-201ENST00000306024 KCNG1Q9UIX4 513 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms