RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	GEP4	P38812	185 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	EGD2	P38879	174 aa	Known RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	YJL070C	P40361	888 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	CDC14	Q00684	551 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	YML131W	Q03102	365 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	YET2	Q04210	160 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	YOL159C	Q08300	171 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	HOS1	Q12214	470 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	CBS2	P14905	389 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	NSP1	P14907	823 aa	Known RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	YCK1	P23291	538 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	CNB1	P25296	175 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	PRP19	P32523	503 aa	Known RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	UGP1	P32861	499 aa	Known RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	YHR182W	P38870	785 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	HAT2	P39984	401 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	ESL1	P40456	1118 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	GCD10	P41814	478 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	SNX4	P47057	423 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	SNF12	P53628	566 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	YCS4	Q06156	1176 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	BCP1	Q06338	283 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	YLR031W	Q07978	186 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	FMP25	Q08023	583 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	MUM3	Q08750	479 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	LAP2	Q10740	671 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	MNL2	Q12205	849 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	MF(ALPHA)1	P01149	165 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	SDH2	P21801	266 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	MEF1	P25039	761 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	ALY1	P36117	915 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	ARN2	P38724	620 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	QNS1	P38795	714 aa	Known RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	SPO73	P40031	143 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	YIL054W	P40524	105 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	GAB1	P41733	394 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	SWP82	P43554	623 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	RRT6	P53117	311 aa	Predicted RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	ARC35	P53731	342 aa	Known RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	EFR3	Q03653	782 aa	Known RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	YMR155W	Q03795	547 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	EMI1	Q04406	187 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	CRF1	Q04930	467 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	SSK1	Q07084	712 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	AHA1	Q12449	350 aa	Known RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	SBP1	P10080	294 aa	Known RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	MET8	P15807	274 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	PHO80	P20052	293 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	CDC3	P32457	520 aa	Known RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	NOP4	P37838	685 aa	Known RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	AHP1	P38013	176 aa	Known RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	YBR056W	P38081	501 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	YGL039W	P53183	348 aa	Known RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	YNR063W	P53749	607 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	VAC7	P53950	1165 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	ISU1	Q03020	165 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	HER2	Q03557	464 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	YMR209C	Q03648	457 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	SPO20	Q04359	397 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	YDR056C	Q12025	205 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	HFI1	Q12060	488 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	SAS5	Q99314	248 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	SUC2	P00724	532 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	NMT1	P14743	455 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	GAC1	P28006	793 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	HSL7	P38274	827 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	DED81	P38707	554 aa	Known RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	DUN1	P39009	513 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	RCY1	P39531	840 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	KHA1	P40309	873 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	BFA1	P47113	574 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	MTL1	P53214	551 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	CUS2	P53830	285 aa	Predicted RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	CEG1	Q01159	459 aa	Predicted RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	YDR476C	Q03362	224 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	YML037C	Q03703	340 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	YDR132C	Q03900	495 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	MUS81	Q04149	632 aa	Predicted RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	SMD2	Q06217	110 aa	Known RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	SEC10	Q06245	871 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	YPQ2	Q06328	317 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	BUD20	Q08004	166 aa	Predicted RBP	3.53	□□□□□ -1.84
SSM4	YIL030C	ATP14	Q12349	124 aa		3.53	□□□□□ -1.84
SSM4	YIL030C	RSR1	P13856	272 aa		3.53	□□□□□ -1.85
SSM4	YIL030C	GCN3	P14741	305 aa		3.53	□□□□□ -1.85
SSM4	YIL030C	DBP3	P20447	523 aa	Known RBP	3.53	□□□□□ -1.85
SSM4	YIL030C	TRX2	P22803	104 aa	Known RBP	3.53	□□□□□ -1.85
SSM4	YIL030C	SGF29	P25554	259 aa		3.53	□□□□□ -1.85
SSM4	YIL030C	NUF2	P33895	451 aa		3.53	□□□□□ -1.85
SSM4	YIL030C	PHO11	P35842	467 aa		3.53	□□□□□ -1.85
SSM4	YIL030C	APM3	P38153	483 aa		3.53	□□□□□ -1.85
SSM4	YIL030C	PHO12	P38693	467 aa		3.53	□□□□□ -1.85
SSM4	YIL030C	YKE4	P40544	346 aa		3.53	□□□□□ -1.85
SSM4	YIL030C	NUP116	Q02630	1113 aa		3.53	□□□□□ -1.85
SSM4	YIL030C	YDR249C	Q03787	373 aa		3.53	□□□□□ -1.85
SSM4	YIL030C	YMR160W	Q03823	816 aa		3.53	□□□□□ -1.85
SSM4	YIL030C	YSH1	Q06224	779 aa	Predicted RBP	3.53	□□□□□ -1.85
SSM4	YIL030C	CMP2	P14747	604 aa		3.52	□□□□□ -1.85
SSM4	YIL030C	PDC5	P16467	563 aa	Known RBP	3.52	□□□□□ -1.85
SSM4	YIL030C	TKL1	P23254	680 aa	Known RBP	3.52	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 29.7 ms