RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 DNAJC25-GNG10A0A024R161 153 aa12.15□□□□□ -0.46
SCN1A-222ENST00000642141 ATP2A1O14983 1001 aa12.15□□□□□ -0.46
SCN1A-222ENST00000642141 IRX5P78411 483 aaPredicted RBP12.15□□□□□ -0.46
SCN1A-222ENST00000642141 MUM1L1Q5H9M0 696 aa12.15□□□□□ -0.46
SCN1A-222ENST00000642141 SLC39A5Q6ZMH5 540 aa12.15□□□□□ -0.46
SCN1A-222ENST00000642141 MFSD6Q6ZSS7 791 aa12.15□□□□□ -0.46
SCN1A-222ENST00000642141 FAM160B2Q86V87 743 aa12.15□□□□□ -0.46
SCN1A-222ENST00000642141 TRERF1Q96PN7 1200 aa12.15□□□□□ -0.46
SCN1A-222ENST00000642141 PURBQ96QR8 312 aaKnown RBP12.15□□□□□ -0.46
SCN1A-222ENST00000642141 PRDM5Q9NQX1 630 aaPredicted RBP12.15□□□□□ -0.46
SCN1A-222ENST00000642141 RNF146Q9NTX7 359 aa12.15□□□□□ -0.46
SCN1A-222ENST00000642141 PRR12Q9ULL5 1215 aa12.15□□□□□ -0.46
SCN1A-222ENST00000642141 ZNF536O15090 1300 aa12.14□□□□□ -0.47
SCN1A-222ENST00000642141 ZNF213O14771 459 aa12.14□□□□□ -0.47
SCN1A-222ENST00000642141 FGRP09769 529 aa12.14□□□□□ -0.47
SCN1A-222ENST00000642141 TOP1P11387 765 aaKnown RBP12.14□□□□□ -0.47
SCN1A-222ENST00000642141 PDE4AP27815 886 aa12.14□□□□□ -0.47
SCN1A-222ENST00000642141 OAZ1P54368 228 aa12.14□□□□□ -0.47
SCN1A-222ENST00000642141 TRIM60Q495X7 471 aa12.14□□□□□ -0.47
SCN1A-222ENST00000642141 AKNAD1Q5T1N1 836 aa12.14□□□□□ -0.47
SCN1A-222ENST00000642141 CHST13Q8NET6 341 aa12.14□□□□□ -0.47
SCN1A-222ENST00000642141 FGD4Q96M96 766 aa12.14□□□□□ -0.47
SCN1A-222ENST00000642141 LBHD1Q9BQE6 289 aaPredicted RBP12.14□□□□□ -0.47
SCN1A-222ENST00000642141 OSBPL3Q9H4L5 887 aa12.14□□□□□ -0.47
SCN1A-222ENST00000642141 FRMPD3Q5JV73 1810 aa12.14□□□□□ -0.47
SCN1A-222ENST00000642141 NEDD4P46934 1319 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 POTEB2H3BUK9 544 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 ADCY6O43306 1168 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 AKR1A1P14550 325 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 PTGS1P23219 599 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 MFAP1P55081 439 aaKnown RBP12.13□□□□□ -0.47
SCN1A-222ENST00000642141 ACVR2BQ13705 512 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 PPP4R3BQ5MIZ7 849 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 SH3RF1Q7Z6J0 888 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 RNF180Q86T96 592 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 CCDC144CPQ8IYA2 1237 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 DCAF4Q8WV16 495 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 ACAD9Q9H845 621 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 A1CFQ9NQ94 594 aaKnown RBP12.13□□□□□ -0.47
SCN1A-222ENST00000642141 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.13□□□□□ -0.47
SCN1A-222ENST00000642141 PRKAG2Q9UGJ0 569 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 FBXO40Q9UH90 709 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 NRBP1Q9UHY1 535 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 FAM184BQ9ULE4 1060 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 CCPG1Q9ULG6 757 aa12.13□□□□□ -0.47
SCN1A-222ENST00000642141 LAMA2P24043 3122 aaKnown RBP12.12□□□□□ -0.47
SCN1A-222ENST00000642141 LAMA3Q16787 3333 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 SMCHD1A6NHR9 2005 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 MYADML2A6NDP7 307 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 SOWAHBA6NEL2 793 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 GOLGA8HP0CJ92 632 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 BMP8BP34820 402 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 TLE2Q04725 743 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 CCDC144BQ3MJ40 725 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 SYDE2Q5VT97 1194 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 MAMDC4Q6UXC1 1216 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 NSMFQ6X4W1 530 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 NOL8Q76FK4 1167 aaKnown RBP12.12□□□□□ -0.47
SCN1A-222ENST00000642141 ARMCX2Q7L311 632 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 EEPD1Q7L9B9 569 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 IL25Q9H293 177 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 CPVLQ9H3G5 476 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 PLXNA1Q9UIW2 1896 aa12.12□□□□□ -0.47
SCN1A-222ENST00000642141 SYNGAP1Q96PV0 1343 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 SYNRGQ9UMZ2 1314 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 A0A1W2PQ45 241 aaPredicted RBP12.11□□□□□ -0.47
SCN1A-222ENST00000642141 A0A1W2PQY0 241 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 B4E1Z4 1266 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 PQBP1O60828 265 aaKnown RBP12.11□□□□□ -0.47
SCN1A-222ENST00000642141 KDM4AO75164 1064 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 C6orf222P0C671 652 aaPredicted RBP12.11□□□□□ -0.47
SCN1A-222ENST00000642141 FDX1P10109 184 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 GSPT1P15170 499 aaKnown RBP12.11□□□□□ -0.47
SCN1A-222ENST00000642141 NOVP48745 357 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 KCNA10Q16322 511 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 ZNF467Q7Z7K2 595 aaPredicted RBP12.11□□□□□ -0.47
SCN1A-222ENST00000642141 TICAM2Q86XR7 235 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 TDHQ8IZJ6 230 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 MSL3Q8N5Y2 521 aaKnown RBP12.11□□□□□ -0.47
SCN1A-222ENST00000642141 FAM133AQ8N9E0 248 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 ESR2Q92731 530 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 VTI1AQ96AJ9 217 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 RNF41Q9H4P4 317 aaPredicted RBP12.11□□□□□ -0.47
SCN1A-222ENST00000642141 TCP11L1Q9NUJ3 509 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 PHF24Q9UPV7 400 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 ASTN1O14525 1302 aa12.11□□□□□ -0.47
SCN1A-222ENST00000642141 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.1□□□□□ -0.47
SCN1A-222ENST00000642141 A0A1W2PPC1 479 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 TRIM43BA6NCK2 446 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 HIP1O00291 1037 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 NFIBO00712 420 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 PLA2G6O60733 806 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 ADAMTS4O75173 837 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 ICAM1P05362 532 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 PDHBP11177 359 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 ACLYP53396 1101 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 BAATQ14032 418 aaPredicted RBP12.1□□□□□ -0.47
SCN1A-222ENST00000642141 TMEM63BQ5T3F8 832 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 Q7L0L9 218 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 BADQ92934 168 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms