RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TMCC1O94876 653 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 TSPY1Q01534 308 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 VEPH1Q14D04 833 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 BMP2KLQ5H9B9 411 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 CDKL2Q92772 493 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 TEX12Q9BXU0 123 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 B4E1Z4 1266 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 SPECC1L-ADORA2AF8WAN1 911 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 THAP12O43422 761 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 SDSP20132 328 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 POLA2Q14181 598 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 NEDD9Q14511 834 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 GALNT17Q6IS24 598 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 ENGASEQ8NFI3 743 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 C16orf45Q96MC5 204 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-217ENST00000637988 VCX3AQ9NNX9 186 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 ARFGAP3Q9NP61 516 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 PCDHB8Q9UN66 801 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 SYNJ2BP-COX16A0A087WUM0 186 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 PCP11498 1178 aaKnown RBP6.71□□□□□ -1.34
SCN1A-217ENST00000637988 SYT1P21579 422 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 MNAT1P51948 309 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 NOP14P78316 857 aaKnown RBP6.71□□□□□ -1.34
SCN1A-217ENST00000637988 TYRO3Q06418 890 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 C16orf72Q14CZ0 275 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 DSTYKQ6XUX3 929 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 FAM178BQ8IXR5 827 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 CCDC24Q8N4L8 307 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 RNF217Q8TC41 542 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 COX16Q9P0S2 106 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 GUCA1BQ9UMX6 200 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 PMLP29590 882 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 ATP11AP98196 1134 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 CCDC15Q0P6D6 951 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 PSMD6Q15008 389 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 CWF19L2Q2TBE0 894 aaKnown RBP6.71□□□□□ -1.34
SCN1A-217ENST00000637988 TBC1D9Q6ZT07 1266 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 CCDC121Q6ZUS5 278 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 SIX6OS1Q8N1H7 587 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 ARFGAP2Q8N6H7 521 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 PCDHA12Q9UN75 941 aa6.71□□□□□ -1.34
SCN1A-217ENST00000637988 COL17A1Q9UMD9 1497 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-217ENST00000637988 ALDH1A1P00352 501 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 FOSP01100 380 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 TTC38Q5R3I4 469 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 MAP3K21Q5TCX8 1036 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 LZICQ8WZA0 190 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 TRPV6Q9H1D0 765 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 ZNF804BA4D1E1 1349 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 SMCO2A6NFE2 343 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 GPAA1O43292 621 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 TTLL1O95922 423 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 TFAP4Q01664 338 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 DPYDQ12882 1025 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 JADE1Q6IE81 842 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 DHX36Q9H2U1 1008 aaKnown RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 TBC1D7Q9P0N9 293 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 FRMPD2Q68DX3 1309 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 CLRN2A0PK11 232 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 NVLO15381 856 aaKnown RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 TUBBP07437 444 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 RUFY3Q7L099 469 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 PLA2G4DQ86XP0 818 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 CCDC170Q8IYT3 715 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 SRRTQ9BXP5 876 aaKnown RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 HOXC10Q9NYD6 342 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 SOS2Q07890 1332 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 RAD17O75943 681 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 RBM6P78332 1123 aaKnown RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 NXNQ6DKJ4 435 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 UNC5CLQ8IV45 518 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 CSGALNACT2Q8N6G5 542 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 CAPZA3Q96KX2 299 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 RIPOR2Q9Y4F9 1068 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 EFCAB14O75071 495 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 BRD1O95696 1058 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 DLATP10515 647 aaKnown RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 RXRAP19793 462 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 IRX4P78413 519 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 HSP90AA4PQ58FG1 418 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 TCP11Q8WWU5 503 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 DACT3Q96B18 629 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 CCDC124Q96CT7 223 aaKnown RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 NEUROG2Q9H2A3 272 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 V9GY48 417 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 BIVM-ERCC5R4GMW8 1640 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 ZW10O43264 779 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 MTHFSDQ2M296 383 aaKnown RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 TSHZ3Q63HK5 1081 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 PHLDB2Q86SQ0 1253 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 TBC1D19Q8N5T2 526 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 UGGT2Q9NYU1 1516 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 EDC4Q6P2E9 1401 aaKnown RBP6.7□□□□□ -1.34
SCN1A-217ENST00000637988 HOXB7P09629 217 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 UVSSAQ2YD98 709 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 CREB3L3Q68CJ9 461 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 CACNA2D3Q8IZS8 1091 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 PGBD1Q96JS3 809 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 RILPQ96NA2 401 aa6.7□□□□□ -1.34
SCN1A-217ENST00000637988 LARSQ9P2J5 1176 aaKnown RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms