RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 TTC38Q5R3I4 469 aa20.92■□□□□ 0.94
CLN3-263ENST00000637871 ARL6IP4Q66PJ3 421 aaKnown RBP20.92■□□□□ 0.94
CLN3-263ENST00000637871 ZNF713Q8N859 430 aaPredicted RBP20.92■□□□□ 0.94
CLN3-263ENST00000637871 MAD2L2Q9UI95 211 aa20.92■□□□□ 0.94
CLN3-263ENST00000637871 PCDHA4Q9UN74 947 aa20.92■□□□□ 0.94
CLN3-263ENST00000637871 NT5DC1Q5TFE4 455 aa20.91■□□□□ 0.94
CLN3-263ENST00000637871 BLIDQ8IZY5 108 aa20.91■□□□□ 0.94
CLN3-263ENST00000637871 OTOFQ9HC10 1997 aa20.9■□□□□ 0.94
CLN3-263ENST00000637871 ATP2C1P98194 919 aaPredicted RBP20.9■□□□□ 0.94
CLN3-263ENST00000637871 LONRF3Q496Y0 759 aa20.9■□□□□ 0.94
CLN3-263ENST00000637871 CST9Q5W186 159 aa20.9■□□□□ 0.94
CLN3-263ENST00000637871 AOPEPQ8N6M6 819 aa20.9■□□□□ 0.94
CLN3-263ENST00000637871 CLIP2Q9UDT6 1046 aa20.9■□□□□ 0.94
CLN3-263ENST00000637871 STX8Q9UNK0 236 aa20.9■□□□□ 0.94
CLN3-263ENST00000637871 PARP1P09874 1014 aaKnown RBP20.89■□□□□ 0.94
CLN3-263ENST00000637871 MDM2Q00987 491 aaPredicted RBP20.89■□□□□ 0.94
CLN3-263ENST00000637871 GABPAQ06546 454 aa20.89■□□□□ 0.94
CLN3-263ENST00000637871 FSTL1Q12841 308 aa20.89■□□□□ 0.94
CLN3-263ENST00000637871 DPCR1Q3MIW9 517 aa20.89■□□□□ 0.94
CLN3-263ENST00000637871 MLKLQ8NB16 471 aa20.89■□□□□ 0.94
CLN3-263ENST00000637871 SLC44A5Q8NCS7 719 aa20.89■□□□□ 0.94
CLN3-263ENST00000637871 SHISA4Q96DD7 197 aa20.89■□□□□ 0.94
CLN3-263ENST00000637871 DNAJC18Q9H819 358 aa20.89■□□□□ 0.94
CLN3-263ENST00000637871 IMPACTQ9P2X3 320 aa20.89■□□□□ 0.94
CLN3-263ENST00000637871 SMC2O95347 1197 aa20.89■□□□□ 0.93
CLN3-263ENST00000637871 POSTNQ15063 836 aa20.89■□□□□ 0.93
CLN3-263ENST00000637871 SPTLC3Q9NUV7 552 aa20.89■□□□□ 0.93
CLN3-263ENST00000637871 BARHL2Q9NY43 387 aa20.89■□□□□ 0.93
CLN3-263ENST00000637871 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.89■□□□□ 0.93
CLN3-263ENST00000637871 LAD1O00515 517 aa20.88■□□□□ 0.93
CLN3-263ENST00000637871 HLA-DOAP06340 250 aa20.88■□□□□ 0.93
CLN3-263ENST00000637871 GSDMDP57764 484 aa20.88■□□□□ 0.93
CLN3-263ENST00000637871 ORC2Q13416 577 aaPredicted RBP20.88■□□□□ 0.93
CLN3-263ENST00000637871 TTLL12Q14166 644 aaPredicted RBP20.88■□□□□ 0.93
CLN3-263ENST00000637871 SUPT20HL1Q3ZLR7 823 aa20.88■□□□□ 0.93
CLN3-263ENST00000637871 METTL16Q86W50 562 aaKnown RBP20.88■□□□□ 0.93
CLN3-263ENST00000637871 CCDC17Q96LX7 622 aa20.88■□□□□ 0.93
CLN3-263ENST00000637871 CSRNP2Q9H175 543 aa20.88■□□□□ 0.93
CLN3-263ENST00000637871 DHX36Q9H2U1 1008 aaKnown RBP20.88■□□□□ 0.93
CLN3-263ENST00000637871 PAPPA2Q9BXP8 1791 aa20.88■□□□□ 0.93
CLN3-263ENST00000637871 KLRF2D3W0D1 207 aa20.87■□□□□ 0.93
CLN3-263ENST00000637871 POLR2DO15514 142 aaKnown RBP20.87■□□□□ 0.93
CLN3-263ENST00000637871 NF2P35240 595 aa20.87■□□□□ 0.93
CLN3-263ENST00000637871 NOLC1Q14978 699 aaKnown RBP eCLIP20.87■□□□□ 0.93
CLN3-263ENST00000637871 SHROOM1Q2M3G4 852 aaPredicted RBP20.87■□□□□ 0.93
CLN3-263ENST00000637871 SPC24Q8NBT2 197 aa20.87■□□□□ 0.93
CLN3-263ENST00000637871 SMARCE1Q969G3 411 aa20.87■□□□□ 0.93
CLN3-263ENST00000637871 EHD4Q9H223 541 aa20.87■□□□□ 0.93
CLN3-263ENST00000637871 TTC12Q9H892 705 aaPredicted RBP20.87■□□□□ 0.93
CLN3-263ENST00000637871 PI4KBQ9UBF8 816 aa20.87■□□□□ 0.93
CLN3-263ENST00000637871 CBFA2T2O43439 604 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 SLFN14P0C7P3 912 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 ATP2B1P20020 1258 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 GNA11P29992 359 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 SARSP49591 514 aaKnown RBP20.86■□□□□ 0.93
CLN3-263ENST00000637871 MYL5Q02045 173 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 ASPRV1Q53RT3 343 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 KIAA1524Q8TCG1 905 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 RRP36Q96EU6 259 aaKnown RBP20.86■□□□□ 0.93
CLN3-263ENST00000637871 SERPINB13Q9UIV8 391 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 PCDHA5Q9Y5H7 936 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 CCDC194A0A1B0GVG4 234 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 hCG_1642624A0A1W2PR95 340 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 LONP1P36776 959 aaKnown RBP20.86■□□□□ 0.93
CLN3-263ENST00000637871 SEMA3FQ13275 785 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 RRP1BQ14684 758 aaKnown RBP20.86■□□□□ 0.93
CLN3-263ENST00000637871 CCDC186Q7Z3E2 898 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 STAG2Q8N3U4 1231 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 SPATA20Q8TB22 786 aa20.86■□□□□ 0.93
CLN3-263ENST00000637871 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.86■□□□□ 0.93
CLN3-263ENST00000637871 GBA2Q9HCG7 927 aaPredicted RBP20.86■□□□□ 0.93
CLN3-263ENST00000637871 MYH8P13535 1937 aa20.85■□□□□ 0.93
CLN3-263ENST00000637871 ESYT2A0FGR8 921 aa20.85■□□□□ 0.93
CLN3-263ENST00000637871 ACTN4O43707 911 aaKnown RBP20.85■□□□□ 0.93
CLN3-263ENST00000637871 USP2O75604 605 aaPredicted RBP20.85■□□□□ 0.93
CLN3-263ENST00000637871 PTGDRQ13258 359 aa20.85■□□□□ 0.93
CLN3-263ENST00000637871 PNOCQ13519 176 aa20.85■□□□□ 0.93
CLN3-263ENST00000637871 PIK3AP1Q6ZUJ8 805 aa20.85■□□□□ 0.93
CLN3-263ENST00000637871 KRT25Q7Z3Z0 450 aa20.85■□□□□ 0.93
CLN3-263ENST00000637871 ZMYND12Q9H0C1 365 aa20.85■□□□□ 0.93
CLN3-263ENST00000637871 C6orf50Q9HD87 102 aa20.85■□□□□ 0.93
CLN3-263ENST00000637871 MTMR4Q9NYA4 1195 aa20.85■□□□□ 0.93
CLN3-263ENST00000637871 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.85■□□□□ 0.93
CLN3-263ENST00000637871 SEC63Q9UGP8 760 aaKnown RBP20.85■□□□□ 0.93
CLN3-263ENST00000637871 SERTAD1Q9UHV2 236 aa20.85■□□□□ 0.93
CLN3-263ENST00000637871 IGKV6D-41A0A0C4DH26 115 aa20.84■□□□□ 0.93
CLN3-263ENST00000637871 M0R2N6 131 aa20.84■□□□□ 0.93
CLN3-263ENST00000637871 ZNF174Q15697 407 aa20.84■□□□□ 0.93
CLN3-263ENST00000637871 EARS2Q5JPH6 523 aaKnown RBP20.84■□□□□ 0.93
CLN3-263ENST00000637871 IQUBQ8NA54 791 aa20.84■□□□□ 0.93
CLN3-263ENST00000637871 CEP95Q96GE4 821 aa20.84■□□□□ 0.93
CLN3-263ENST00000637871 WRNIP1Q96S55 665 aa20.84■□□□□ 0.93
CLN3-263ENST00000637871 TRIM34Q9BYJ4 488 aa20.84■□□□□ 0.93
CLN3-263ENST00000637871 STXBP3O00186 592 aa20.83■□□□□ 0.93
CLN3-263ENST00000637871 BIN1O00499 593 aa20.83■□□□□ 0.93
CLN3-263ENST00000637871 TPM2P07951 284 aa20.83■□□□□ 0.93
CLN3-263ENST00000637871 INPP5BP32019 993 aa20.83■□□□□ 0.93
CLN3-263ENST00000637871 SHMT1P34896 483 aa20.83■□□□□ 0.93
CLN3-263ENST00000637871 TXLNAP40222 546 aa20.83■□□□□ 0.93
CLN3-263ENST00000637871 HTRA3P83110 453 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms