RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CCL14Q16627 93 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 ADCK5Q3MIX3 580 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 GPATCH4Q5T3I0 446 aaKnown RBP11.51□□□□□ -0.57
CLN3-261ENST00000637686 DPP9Q86TI2 863 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 NPLOC4Q8TAT6 608 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 TRIB2Q92519 343 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 AGBL1Q96MI9 1066 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 NEK1Q96PY6 1258 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 MMP19Q99542 508 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 APBA2Q99767 749 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 RANBP17Q9H2T7 1088 aaKnown RBP11.51□□□□□ -0.57
CLN3-261ENST00000637686 CPVLQ9H3G5 476 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 ZNF536O15090 1300 aa11.51□□□□□ -0.57
CLN3-261ENST00000637686 HMGCRP04035 888 aa11.5□□□□□ -0.57
CLN3-261ENST00000637686 TAL1P17542 331 aaPredicted RBP11.5□□□□□ -0.57
CLN3-261ENST00000637686 TRIM32Q13049 653 aa11.5□□□□□ -0.57
CLN3-261ENST00000637686 ASPRV1Q53RT3 343 aa11.5□□□□□ -0.57
CLN3-261ENST00000637686 ABRAQ8N0Z2 381 aa11.5□□□□□ -0.57
CLN3-261ENST00000637686 STAG2Q8N3U4 1231 aa11.5□□□□□ -0.57
CLN3-261ENST00000637686 SNX21Q969T3 373 aa11.5□□□□□ -0.57
CLN3-261ENST00000637686 TMEM87BQ96K49 555 aa11.5□□□□□ -0.57
CLN3-261ENST00000637686 LRRC2Q9BYS8 371 aa11.5□□□□□ -0.57
CLN3-261ENST00000637686 ALDH8A1Q9H2A2 487 aaPredicted RBP11.5□□□□□ -0.57
CLN3-261ENST00000637686 LY9Q9HBG7 655 aa11.5□□□□□ -0.57
CLN3-261ENST00000637686 ZSWIM6Q9HCJ5 1215 aa11.5□□□□□ -0.57
CLN3-261ENST00000637686 HOMER2Q9NSB8 354 aa11.5□□□□□ -0.57
CLN3-261ENST00000637686 WDR19Q8NEZ3 1342 aa11.5□□□□□ -0.57
CLN3-261ENST00000637686 POTEFA5A3E0 1075 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 SH2B2O14492 632 aaPredicted RBP11.49□□□□□ -0.57
CLN3-261ENST00000637686 ICAM1P05362 532 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 PGK2P07205 417 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 HOXC6P09630 235 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 ALAS1P13196 640 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 CCL5P13501 91 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 MCM2P49736 904 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 EXOSC10Q01780 885 aaKnown RBP11.49□□□□□ -0.57
CLN3-261ENST00000637686 KCTD2Q14681 263 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 GRM4Q14833 912 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 NFXL1Q6ZNB6 911 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 DHX32Q7L7V1 743 aaKnown RBP11.49□□□□□ -0.57
CLN3-261ENST00000637686 CATIPQ7Z7H3 387 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 TRMT44Q8IYL2 757 aaKnown RBP11.49□□□□□ -0.57
CLN3-261ENST00000637686 ADGRF4Q8IZF3 695 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 FBXL16Q8N461 479 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 CHST13Q8NET6 341 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 NUP133Q8WUM0 1156 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 TCEANC2Q96MN5 208 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 TRERF1Q96PN7 1200 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 MTA3Q9BTC8 594 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 TMEM106CQ9BVX2 250 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 RNF208Q9H0X6 261 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 UNC93B1Q9H1C4 597 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 VAT1LQ9HCJ6 419 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 FLRT1Q9NZU1 646 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 MAD2L2Q9UI95 211 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 CCPG1Q9ULG6 757 aa11.49□□□□□ -0.57
CLN3-261ENST00000637686 PALM3A6NDB9 673 aaPredicted RBP11.48□□□□□ -0.57
CLN3-261ENST00000637686 ST18O60284 1047 aa11.48□□□□□ -0.57
CLN3-261ENST00000637686 TROAPQ12815 778 aa11.48□□□□□ -0.57
CLN3-261ENST00000637686 TKFCQ3LXA3 575 aa11.48□□□□□ -0.57
CLN3-261ENST00000637686 TMTC2Q8N394 836 aa11.48□□□□□ -0.57
CLN3-261ENST00000637686 DDX11Q96FC9 970 aa11.48□□□□□ -0.57
CLN3-261ENST00000637686 JAKMIP1Q96N16 626 aaKnown RBP11.48□□□□□ -0.57
CLN3-261ENST00000637686 MYL10Q9BUA6 226 aa11.48□□□□□ -0.57
CLN3-261ENST00000637686 RNF146Q9NTX7 359 aa11.48□□□□□ -0.57
CLN3-261ENST00000637686 SLC5A4Q9NY91 659 aa11.48□□□□□ -0.57
CLN3-261ENST00000637686 FBXO40Q9UH90 709 aa11.48□□□□□ -0.57
CLN3-261ENST00000637686 ZNFX1Q9P2E3 1918 aaKnown RBP11.48□□□□□ -0.57
CLN3-261ENST00000637686 ZNF236Q9UL36 1845 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 CCDC69A6NI79 296 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 KLRF2D3W0D1 207 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 DHX16O60231 1041 aaKnown RBP11.47□□□□□ -0.57
CLN3-261ENST00000637686 CPA1P15085 419 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 EN2P19622 333 aaPredicted RBP11.47□□□□□ -0.57
CLN3-261ENST00000637686 LIFRP42702 1097 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 CACNB2Q08289 660 aaPredicted RBP11.47□□□□□ -0.57
CLN3-261ENST00000637686 CDC37Q16543 378 aaPredicted RBP11.47□□□□□ -0.57
CLN3-261ENST00000637686 ZNF792Q3KQV3 632 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 MUM1L1Q5H9M0 696 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 MFSD14CQ5VZR4 134 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 OLFML2BQ68BL8 750 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 BLOC1S2Q6QNY1 142 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 RUFY3Q7L099 469 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLN3-261ENST00000637686 ZNF654Q8IZM8 581 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 ANKRD35Q8N283 1001 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 ACAD9Q9H845 621 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 JMJD4Q9H9V9 463 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 CYP46A1Q9Y6A2 500 aa11.47□□□□□ -0.57
CLN3-261ENST00000637686 RPTORQ8N122 1335 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 DNAJC25-GNG10A0A024R161 153 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 DDAH1O94760 285 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 IGHA2P01877 340 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 PRKAR2AP13861 404 aaKnown RBP11.46□□□□□ -0.57
CLN3-261ENST00000637686 RXRAP19793 462 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 CYP2C19P33261 490 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 BECN1Q14457 450 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 ANKRD1Q15327 319 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 USH1GQ495M9 461 aa11.46□□□□□ -0.57
CLN3-261ENST00000637686 MAP3K21Q5TCX8 1036 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms