RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SPRED2Q7Z698 418 aa17.62■□□□□ 0.41
CLN3-249ENST00000636685 ZNF467Q7Z7K2 595 aaPredicted RBP17.62■□□□□ 0.41
CLN3-249ENST00000636685 FGD4Q96M96 766 aa17.62■□□□□ 0.41
CLN3-249ENST00000636685 FBXL18Q96ME1 805 aa17.62■□□□□ 0.41
CLN3-249ENST00000636685 ASTN1O14525 1302 aa17.62■□□□□ 0.41
CLN3-249ENST00000636685 BAZ2AQ9UIF9 1905 aaKnown RBP17.62■□□□□ 0.41
CLN3-249ENST00000636685 MAGEB6P1A0A0J9YX57 407 aa17.61■□□□□ 0.41
CLN3-249ENST00000636685 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.61■□□□□ 0.41
CLN3-249ENST00000636685 RAD21O60216 631 aa17.61■□□□□ 0.41
CLN3-249ENST00000636685 LPXNO60711 386 aa17.61■□□□□ 0.41
CLN3-249ENST00000636685 GNAI2P04899 355 aa17.61■□□□□ 0.41
CLN3-249ENST00000636685 NKX3-2P78367 333 aa17.61■□□□□ 0.41
CLN3-249ENST00000636685 OS9Q13438 667 aaPredicted RBP17.61■□□□□ 0.41
CLN3-249ENST00000636685 ARMCX2Q7L311 632 aa17.61■□□□□ 0.41
CLN3-249ENST00000636685 DEFB128Q7Z7B8 93 aa17.61■□□□□ 0.41
CLN3-249ENST00000636685 GJD3Q8N144 294 aa17.61■□□□□ 0.41
CLN3-249ENST00000636685 TEX13BQ9BXU2 312 aa17.61■□□□□ 0.41
CLN3-249ENST00000636685 CRNKL1Q9BZJ0 848 aaKnown RBP17.61■□□□□ 0.41
CLN3-249ENST00000636685 KATNBL1Q9H079 304 aa17.61■□□□□ 0.41
CLN3-249ENST00000636685 CCDC8Q9H0W5 538 aaPredicted RBP17.61■□□□□ 0.41
CLN3-249ENST00000636685 ZNF318Q5VUA4 2279 aa17.6■□□□□ 0.41
CLN3-249ENST00000636685 CABYRO75952 493 aa17.6■□□□□ 0.41
CLN3-249ENST00000636685 EEF2P13639 858 aaKnown RBP17.6■□□□□ 0.41
CLN3-249ENST00000636685 PTGS1P23219 599 aa17.6■□□□□ 0.41
CLN3-249ENST00000636685 PSMC6P62333 389 aa17.6■□□□□ 0.41
CLN3-249ENST00000636685 NOL8Q76FK4 1167 aaKnown RBP17.6■□□□□ 0.41
CLN3-249ENST00000636685 SDR42E1Q8WUS8 393 aa17.6■□□□□ 0.41
CLN3-249ENST00000636685 SWAP70Q9UH65 585 aa17.6■□□□□ 0.41
CLN3-249ENST00000636685 PTPRSQ13332 1948 aa17.6■□□□□ 0.41
CLN3-249ENST00000636685 TET1Q8NFU7 2136 aa17.59■□□□□ 0.41
CLN3-249ENST00000636685 CSPP1Q1MSJ5 1256 aa17.59■□□□□ 0.41
CLN3-249ENST00000636685 FAM178BQ8IXR5 827 aa17.59■□□□□ 0.41
CLN3-249ENST00000636685 DCP1AQ9NPI6 582 aaPredicted RBP17.59■□□□□ 0.41
CLN3-249ENST00000636685 PFKMP08237 780 aa17.58■□□□□ 0.4
CLN3-249ENST00000636685 SSTR3P32745 418 aaPredicted RBP17.58■□□□□ 0.4
CLN3-249ENST00000636685 TNFAIP2Q03169 654 aa17.58■□□□□ 0.4
CLN3-249ENST00000636685 FSCN1Q16658 493 aaKnown RBP17.58■□□□□ 0.4
CLN3-249ENST00000636685 CCDC144CPQ8IYA2 1237 aa17.58■□□□□ 0.4
CLN3-249ENST00000636685 CPXCR1Q8N123 301 aa17.58■□□□□ 0.4
CLN3-249ENST00000636685 SLC9A7Q96T83 725 aa17.58■□□□□ 0.4
CLN3-249ENST00000636685 NUP88Q99567 741 aaPredicted RBP17.58■□□□□ 0.4
CLN3-249ENST00000636685 SLF1Q9BQI6 1058 aa17.58■□□□□ 0.4
CLN3-249ENST00000636685 GOPCQ9HD26 462 aa17.58■□□□□ 0.4
CLN3-249ENST00000636685 CYP2C9P11712 490 aa17.57■□□□□ 0.4
CLN3-249ENST00000636685 TLK2Q86UE8 772 aa17.57■□□□□ 0.4
CLN3-249ENST00000636685 HERC6Q8IVU3 1022 aa17.57■□□□□ 0.4
CLN3-249ENST00000636685 ANKRD35Q8N283 1001 aa17.57■□□□□ 0.4
CLN3-249ENST00000636685 GDPD5Q8WTR4 605 aa17.57■□□□□ 0.4
CLN3-249ENST00000636685 UBE2ZQ9H832 354 aaPredicted RBP17.57■□□□□ 0.4
CLN3-249ENST00000636685 GNEQ9Y223 722 aaKnown RBP17.57■□□□□ 0.4
CLN3-249ENST00000636685 ALADP13716 330 aa17.56■□□□□ 0.4
CLN3-249ENST00000636685 IL9P15248 144 aa17.56■□□□□ 0.4
CLN3-249ENST00000636685 POLA2Q14181 598 aa17.56■□□□□ 0.4
CLN3-249ENST00000636685 LCORLQ8N3X6 602 aa17.56■□□□□ 0.4
CLN3-249ENST00000636685 PHOSPHO2Q8TCD6 241 aa17.56■□□□□ 0.4
CLN3-249ENST00000636685 EAF2Q96CJ1 260 aaPredicted RBP17.56■□□□□ 0.4
CLN3-249ENST00000636685 SEZ6LQ9BYH1 1024 aa17.56■□□□□ 0.4
CLN3-249ENST00000636685 ALDH8A1Q9H2A2 487 aaPredicted RBP17.56■□□□□ 0.4
CLN3-249ENST00000636685 TRMT13Q9NUP7 481 aaKnown RBP17.56■□□□□ 0.4
CLN3-249ENST00000636685 CYP2D7A0A087X1C5 515 aa17.55■□□□□ 0.4
CLN3-249ENST00000636685 KIF28PB7ZC32 967 aa17.55■□□□□ 0.4
CLN3-249ENST00000636685 DYNC1LI2O43237 492 aaPredicted RBP17.55■□□□□ 0.4
CLN3-249ENST00000636685 SURF6O75683 361 aaKnown RBP17.55■□□□□ 0.4
CLN3-249ENST00000636685 ACTN1P12814 892 aa17.55■□□□□ 0.4
CLN3-249ENST00000636685 CDK8P49336 464 aa17.55■□□□□ 0.4
CLN3-249ENST00000636685 CNTN2Q02246 1040 aa17.55■□□□□ 0.4
CLN3-249ENST00000636685 TMED8Q6PL24 325 aaPredicted RBP17.55■□□□□ 0.4
CLN3-249ENST00000636685 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.55■□□□□ 0.4
CLN3-249ENST00000636685 ANKS1AQ92625 1134 aa17.55■□□□□ 0.4
CLN3-249ENST00000636685 CCDC17Q96LX7 622 aa17.55■□□□□ 0.4
CLN3-249ENST00000636685 AP5M1Q9H0R1 490 aa17.55■□□□□ 0.4
CLN3-249ENST00000636685 RAVER2Q9HCJ3 691 aaKnown RBP17.55■□□□□ 0.4
CLN3-249ENST00000636685 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.54■□□□□ 0.4
CLN3-249ENST00000636685 PDE6AP16499 860 aa17.54■□□□□ 0.4
CLN3-249ENST00000636685 SMPD1P17405 629 aa17.54■□□□□ 0.4
CLN3-249ENST00000636685 LEXMQ3ZCV2 418 aa17.54■□□□□ 0.4
CLN3-249ENST00000636685 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.54■□□□□ 0.4
CLN3-249ENST00000636685 PHOX2BQ99453 314 aa17.54■□□□□ 0.4
CLN3-249ENST00000636685 KCNH6Q9H252 994 aa17.54■□□□□ 0.4
CLN3-249ENST00000636685 KANSL2Q9H9L4 492 aa17.54■□□□□ 0.4
CLN3-249ENST00000636685 TNNQ9UQP3 1299 aa17.54■□□□□ 0.4
CLN3-249ENST00000636685 TANC1Q9C0D5 1861 aa17.54■□□□□ 0.4
CLN3-249ENST00000636685 TRIP12Q14669 1992 aaPredicted RBP17.53■□□□□ 0.4
CLN3-249ENST00000636685 ZNF532Q9HCE3 1301 aa17.53■□□□□ 0.4
CLN3-249ENST00000636685 LCHNA4D1U4 455 aa17.53■□□□□ 0.4
CLN3-249ENST00000636685 ATP2A1O14983 1001 aa17.53■□□□□ 0.4
CLN3-249ENST00000636685 PRKAB2O43741 272 aa17.53■□□□□ 0.4
CLN3-249ENST00000636685 ZEB2O60315 1214 aa17.53■□□□□ 0.4
CLN3-249ENST00000636685 BCAR3O75815 825 aa17.53■□□□□ 0.4
CLN3-249ENST00000636685 KCNA5P22460 613 aa17.53■□□□□ 0.4
CLN3-249ENST00000636685 TMEM63BQ5T3F8 832 aa17.53■□□□□ 0.4
CLN3-249ENST00000636685 SLC9C2Q5TAH2 1124 aa17.53■□□□□ 0.4
CLN3-249ENST00000636685 LMCD1Q9NZU5 365 aa17.53■□□□□ 0.4
CLN3-249ENST00000636685 DDX49Q9Y6V7 483 aaKnown RBP17.53■□□□□ 0.4
CLN3-249ENST00000636685 TNKSO95271 1327 aa17.52■□□□□ 0.4
CLN3-249ENST00000636685 ANP32CO43423 234 aa17.52■□□□□ 0.4
CLN3-249ENST00000636685 DCXO43602 365 aa17.52■□□□□ 0.4
CLN3-249ENST00000636685 ZBED4O75132 1171 aa17.52■□□□□ 0.4
CLN3-249ENST00000636685 PTCRAQ6ISU1 281 aaPredicted RBP17.52■□□□□ 0.4
CLN3-249ENST00000636685 SSH3Q8TE77 659 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms