RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 KCNB2Q92953 911 aa17.79■□□□□ 0.44
LIG1-219ENST00000600055 NEK1Q96PY6 1258 aa17.79■□□□□ 0.44
LIG1-219ENST00000600055 UNC93B1Q9H1C4 597 aa17.79■□□□□ 0.44
LIG1-219ENST00000600055 SH2B2O14492 632 aaPredicted RBP17.78■□□□□ 0.44
LIG1-219ENST00000600055 HOXC6P09630 235 aa17.78■□□□□ 0.44
LIG1-219ENST00000600055 ALAS1P13196 640 aa17.78■□□□□ 0.44
LIG1-219ENST00000600055 TCEANC2Q96MN5 208 aa17.78■□□□□ 0.44
LIG1-219ENST00000600055 SNX14Q9Y5W7 946 aa17.78■□□□□ 0.44
LIG1-219ENST00000600055 KCTD2Q14681 263 aa17.77■□□□□ 0.44
LIG1-219ENST00000600055 ADGRF4Q8IZF3 695 aa17.77■□□□□ 0.44
LIG1-219ENST00000600055 TMEM87BQ96K49 555 aa17.77■□□□□ 0.44
LIG1-219ENST00000600055 MYL10Q9BUA6 226 aa17.77■□□□□ 0.44
LIG1-219ENST00000600055 TMEM106CQ9BVX2 250 aa17.77■□□□□ 0.44
LIG1-219ENST00000600055 USP26Q9BXU7 913 aa17.77■□□□□ 0.44
LIG1-219ENST00000600055 RNF208Q9H0X6 261 aa17.77■□□□□ 0.44
LIG1-219ENST00000600055 RNF146Q9NTX7 359 aa17.77■□□□□ 0.44
LIG1-219ENST00000600055 MAD2L2Q9UI95 211 aa17.77■□□□□ 0.44
LIG1-219ENST00000600055 CCPG1Q9ULG6 757 aa17.77■□□□□ 0.44
LIG1-219ENST00000600055 ICAM1P05362 532 aa17.76■□□□□ 0.43
LIG1-219ENST00000600055 CPA1P15085 419 aa17.76■□□□□ 0.43
LIG1-219ENST00000600055 EN2P19622 333 aaPredicted RBP17.76■□□□□ 0.43
LIG1-219ENST00000600055 EXOSC10Q01780 885 aaKnown RBP17.76■□□□□ 0.43
LIG1-219ENST00000600055 CACNB2Q08289 660 aaPredicted RBP17.76■□□□□ 0.43
LIG1-219ENST00000600055 TROAPQ12815 778 aa17.76■□□□□ 0.43
LIG1-219ENST00000600055 KRT32Q14532 448 aa17.76■□□□□ 0.43
LIG1-219ENST00000600055 GRM4Q14833 912 aa17.76■□□□□ 0.43
LIG1-219ENST00000600055 MUM1L1Q5H9M0 696 aa17.76■□□□□ 0.43
LIG1-219ENST00000600055 CATIPQ7Z7H3 387 aa17.76■□□□□ 0.43
LIG1-219ENST00000600055 TRMT44Q8IYL2 757 aaKnown RBP17.76■□□□□ 0.43
LIG1-219ENST00000600055 CHST13Q8NET6 341 aa17.76■□□□□ 0.43
LIG1-219ENST00000600055 TRERF1Q96PN7 1200 aa17.76■□□□□ 0.43
LIG1-219ENST00000600055 MTA3Q9BTC8 594 aa17.76■□□□□ 0.43
LIG1-219ENST00000600055 VAT1LQ9HCJ6 419 aa17.76■□□□□ 0.43
LIG1-219ENST00000600055 PALM3A6NDB9 673 aaPredicted RBP17.75■□□□□ 0.43
LIG1-219ENST00000600055 KLRF2D3W0D1 207 aa17.75■□□□□ 0.43
LIG1-219ENST00000600055 PRKAR2AP13861 404 aaKnown RBP17.75■□□□□ 0.43
LIG1-219ENST00000600055 CYP2C19P33261 490 aa17.75■□□□□ 0.43
LIG1-219ENST00000600055 SLC35G1Q2M3R5 365 aa17.75■□□□□ 0.43
LIG1-219ENST00000600055 ZNF792Q3KQV3 632 aa17.75■□□□□ 0.43
LIG1-219ENST00000600055 MAP3K21Q5TCX8 1036 aa17.75■□□□□ 0.43
LIG1-219ENST00000600055 NFXL1Q6ZNB6 911 aa17.75■□□□□ 0.43
LIG1-219ENST00000600055 DHX32Q7L7V1 743 aaKnown RBP17.75■□□□□ 0.43
LIG1-219ENST00000600055 RAB11FIP4Q86YS3 637 aa17.75■□□□□ 0.43
LIG1-219ENST00000600055 ZNF654Q8IZM8 581 aa17.75■□□□□ 0.43
LIG1-219ENST00000600055 NUP133Q8WUM0 1156 aa17.75■□□□□ 0.43
LIG1-219ENST00000600055 JAKMIP1Q96N16 626 aaKnown RBP17.75■□□□□ 0.43
LIG1-219ENST00000600055 ACAD9Q9H845 621 aa17.75■□□□□ 0.43
LIG1-219ENST00000600055 FBXO40Q9UH90 709 aa17.75■□□□□ 0.43
LIG1-219ENST00000600055 ZNF236Q9UL36 1845 aa17.75■□□□□ 0.43
LIG1-219ENST00000600055 CCDC69A6NI79 296 aa17.74■□□□□ 0.43
LIG1-219ENST00000600055 DHX16O60231 1041 aaKnown RBP17.74■□□□□ 0.43
LIG1-219ENST00000600055 IGHA2P01877 340 aa17.74■□□□□ 0.43
LIG1-219ENST00000600055 CDC37Q16543 378 aaPredicted RBP17.74■□□□□ 0.43
LIG1-219ENST00000600055 TKFCQ3LXA3 575 aa17.74■□□□□ 0.43
LIG1-219ENST00000600055 MFSD14CQ5VZR4 134 aa17.74■□□□□ 0.43
LIG1-219ENST00000600055 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.74■□□□□ 0.43
LIG1-219ENST00000600055 ANKRD35Q8N283 1001 aa17.74■□□□□ 0.43
LIG1-219ENST00000600055 DDX11Q96FC9 970 aa17.74■□□□□ 0.43
LIG1-219ENST00000600055 MAML3Q96JK9 1138 aa17.74■□□□□ 0.43
LIG1-219ENST00000600055 JMJD4Q9H9V9 463 aa17.74■□□□□ 0.43
LIG1-219ENST00000600055 SLC5A4Q9NY91 659 aa17.74■□□□□ 0.43
LIG1-219ENST00000600055 DNAJC25-GNG10A0A024R161 153 aa17.73■□□□□ 0.43
LIG1-219ENST00000600055 EPB41L2O43491 1005 aaKnown RBP17.73■□□□□ 0.43
LIG1-219ENST00000600055 RXRAP19793 462 aa17.73■□□□□ 0.43
LIG1-219ENST00000600055 CCND3P30281 292 aaPredicted RBP17.73■□□□□ 0.43
LIG1-219ENST00000600055 LIFRP42702 1097 aa17.73■□□□□ 0.43
LIG1-219ENST00000600055 OLFML2BQ68BL8 750 aa17.73■□□□□ 0.43
LIG1-219ENST00000600055 TMTC2Q8N394 836 aa17.73■□□□□ 0.43
LIG1-219ENST00000600055 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.73■□□□□ 0.43
LIG1-219ENST00000600055 HMX1Q9NP08 348 aaPredicted RBP17.73■□□□□ 0.43
LIG1-219ENST00000600055 A1CFQ9NQ94 594 aaKnown RBP17.73■□□□□ 0.43
LIG1-219ENST00000600055 PAK6Q9NQU5 681 aaPredicted RBP17.73■□□□□ 0.43
LIG1-219ENST00000600055 RPTORQ8N122 1335 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 DDAH1O94760 285 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 GJB1P08034 283 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 RGS19P49795 217 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 CNTN2Q02246 1040 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 QRICH1Q2TAL8 776 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 USH1GQ495M9 461 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 PRAMEF19Q5SWL8 479 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 CCDC144CPQ8IYA2 1237 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 TRPV1Q8NER1 839 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 SHISA4Q96DD7 197 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 FGD4Q96M96 766 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 DEFB118Q96PH6 123 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 WDR19Q8NEZ3 1342 aa17.72■□□□□ 0.43
LIG1-219ENST00000600055 NFIBO00712 420 aa17.71■□□□□ 0.43
LIG1-219ENST00000600055 CYTH3O43739 400 aa17.71■□□□□ 0.43
LIG1-219ENST00000600055 HMGB1P09429 215 aaKnown RBP17.71■□□□□ 0.43
LIG1-219ENST00000600055 GJA8P48165 433 aa17.71■□□□□ 0.43
LIG1-219ENST00000600055 BLOC1S2Q6QNY1 142 aa17.71■□□□□ 0.43
LIG1-219ENST00000600055 NSMFQ6X4W1 530 aa17.71■□□□□ 0.43
LIG1-219ENST00000600055 SGMS1Q86VZ5 419 aa17.71■□□□□ 0.43
LIG1-219ENST00000600055 U2AF1L4Q8WU68 220 aaKnown RBP17.71■□□□□ 0.43
LIG1-219ENST00000600055 CLEC4DQ8WXI8 215 aa17.71■□□□□ 0.43
LIG1-219ENST00000600055 PURBQ96QR8 312 aaKnown RBP17.71■□□□□ 0.43
LIG1-219ENST00000600055 BRPF3Q9ULD4 1205 aa17.71■□□□□ 0.43
LIG1-219ENST00000600055 DIS3Q9Y2L1 958 aaKnown RBP17.71■□□□□ 0.43
LIG1-219ENST00000600055 SLC12A7Q9Y666 1083 aa17.71■□□□□ 0.43
LIG1-219ENST00000600055 PLEKHA8P1O95397 391 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms