RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.21■□□□□ 0.19
UPF1-205ENST00000598209 HMX1Q9NP08 348 aaPredicted RBP16.21■□□□□ 0.19
UPF1-205ENST00000598209 HOMER2Q9NSB8 354 aa16.21■□□□□ 0.19
UPF1-205ENST00000598209 FBXO40Q9UH90 709 aa16.21■□□□□ 0.19
UPF1-205ENST00000598209 RPTORQ8N122 1335 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 FRMPD3Q5JV73 1810 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 BRCA2P51587 3418 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 PGK2P07205 417 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 PARP1P09874 1014 aaKnown RBP16.2■□□□□ 0.18
UPF1-205ENST00000598209 MLLT1Q03111 559 aaPredicted RBP16.2■□□□□ 0.18
UPF1-205ENST00000598209 CACNB2Q08289 660 aaPredicted RBP16.2■□□□□ 0.18
UPF1-205ENST00000598209 TKFCQ3LXA3 575 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 TMEM67Q5HYA8 995 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 OLFML2BQ68BL8 750 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.2■□□□□ 0.18
UPF1-205ENST00000598209 IGDCC4Q8TDY8 1250 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 UBA5Q9GZZ9 404 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 SENP2Q9HC62 589 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 PAK6Q9NQU5 681 aaPredicted RBP16.2■□□□□ 0.18
UPF1-205ENST00000598209 RNF146Q9NTX7 359 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 CCPG1Q9ULG6 757 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 MCM3APO60318 1980 aa16.2■□□□□ 0.18
UPF1-205ENST00000598209 PRC1O43663 620 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 REC8O95072 547 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 IGHA2P01877 340 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 ICAM1P05362 532 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 ALAS1P13196 640 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 MCM5P33992 734 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 GJA8P48165 433 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 COL9A3Q14050 684 aaPredicted RBP16.19■□□□□ 0.18
UPF1-205ENST00000598209 ZNF792Q3KQV3 632 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 U2AF1L4Q8WU68 220 aaKnown RBP16.19■□□□□ 0.18
UPF1-205ENST00000598209 SHISA4Q96DD7 197 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 DDX11Q96FC9 970 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 MAML3Q96JK9 1138 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 DEFB118Q96PH6 123 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 TRERF1Q96PN7 1200 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 CPVLQ9H3G5 476 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 ACAD9Q9H845 621 aa16.19■□□□□ 0.18
UPF1-205ENST00000598209 LCTP09848 1927 aa16.18■□□□□ 0.18
UPF1-205ENST00000598209 SGPL1O95470 568 aa16.18■□□□□ 0.18
UPF1-205ENST00000598209 TAL1P17542 331 aaPredicted RBP16.18■□□□□ 0.18
UPF1-205ENST00000598209 CYP2C19P33261 490 aa16.18■□□□□ 0.18
UPF1-205ENST00000598209 RASEFQ8IZ41 740 aa16.18■□□□□ 0.18
UPF1-205ENST00000598209 ANKRD35Q8N283 1001 aa16.18■□□□□ 0.18
UPF1-205ENST00000598209 MTA3Q9BTC8 594 aa16.18■□□□□ 0.18
UPF1-205ENST00000598209 LY9Q9HBG7 655 aa16.18■□□□□ 0.18
UPF1-205ENST00000598209 GPHNQ9NQX3 736 aaPredicted RBP16.18■□□□□ 0.18
UPF1-205ENST00000598209 DIS3Q9Y2L1 958 aaKnown RBP16.18■□□□□ 0.18
UPF1-205ENST00000598209 BAZ2BQ9UIF8 2168 aaKnown RBP16.18■□□□□ 0.18
UPF1-205ENST00000598209 DNAJC25-GNG10A0A024R161 153 aa16.17■□□□□ 0.18
UPF1-205ENST00000598209 CCND3P30281 292 aaPredicted RBP16.17■□□□□ 0.18
UPF1-205ENST00000598209 GRM4Q14833 912 aa16.17■□□□□ 0.18
UPF1-205ENST00000598209 TSGA10IPQ3SY00 556 aa16.17■□□□□ 0.18
UPF1-205ENST00000598209 MUM1L1Q5H9M0 696 aa16.17■□□□□ 0.18
UPF1-205ENST00000598209 ADGRF4Q8IZF3 695 aa16.17■□□□□ 0.18
UPF1-205ENST00000598209 STAG2Q8N3U4 1231 aa16.17■□□□□ 0.18
UPF1-205ENST00000598209 TMEM87BQ96K49 555 aa16.17■□□□□ 0.18
UPF1-205ENST00000598209 NEK1Q96PY6 1258 aa16.17■□□□□ 0.18
UPF1-205ENST00000598209 SH2B2O14492 632 aaPredicted RBP16.16■□□□□ 0.18
UPF1-205ENST00000598209 DHX16O60231 1041 aaKnown RBP16.16■□□□□ 0.18
UPF1-205ENST00000598209 TFRCP02786 760 aaKnown RBP16.16■□□□□ 0.18
UPF1-205ENST00000598209 KRT32Q14532 448 aa16.16■□□□□ 0.18
UPF1-205ENST00000598209 ADCK5Q3MIX3 580 aa16.16■□□□□ 0.18
UPF1-205ENST00000598209 CATIPQ7Z7H3 387 aa16.16■□□□□ 0.18
UPF1-205ENST00000598209 CRISPLD2Q9H0B8 497 aa16.16■□□□□ 0.18
UPF1-205ENST00000598209 A1CFQ9NQ94 594 aaKnown RBP16.16■□□□□ 0.18
UPF1-205ENST00000598209 MAD2L2Q9UI95 211 aa16.16■□□□□ 0.18
UPF1-205ENST00000598209 PNMA2Q9UL42 364 aa16.16■□□□□ 0.18
UPF1-205ENST00000598209 WDR19Q8NEZ3 1342 aa16.16■□□□□ 0.18
UPF1-205ENST00000598209 PALM3A6NDB9 673 aaPredicted RBP16.15■□□□□ 0.18
UPF1-205ENST00000598209 KLRF2D3W0D1 207 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 CYBAP13498 195 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 HSPA4P34932 840 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 TROAPQ12815 778 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 CDC37Q16543 378 aaPredicted RBP16.15■□□□□ 0.18
UPF1-205ENST00000598209 NFXL1Q6ZNB6 911 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 ZNF654Q8IZM8 581 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 TMTC2Q8N394 836 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 TRPV1Q8NER1 839 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 KCNB2Q92953 911 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 TINF2Q9BSI4 451 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 LRRC2Q9BYS8 371 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 JMJD4Q9H9V9 463 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 VAT1LQ9HCJ6 419 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 PFASO15067 1338 aa16.15■□□□□ 0.18
UPF1-205ENST00000598209 CCDC69A6NI79 296 aa16.14■□□□□ 0.17
UPF1-205ENST00000598209 POTEB2H3BUK9 544 aa16.14■□□□□ 0.17
UPF1-205ENST00000598209 DDAH1O94760 285 aa16.14■□□□□ 0.17
UPF1-205ENST00000598209 CAPN2P17655 700 aa16.14■□□□□ 0.17
UPF1-205ENST00000598209 CNGA1P29973 690 aa16.14■□□□□ 0.17
UPF1-205ENST00000598209 LIFRP42702 1097 aa16.14■□□□□ 0.17
UPF1-205ENST00000598209 PRAMEF19Q5SWL8 479 aa16.14■□□□□ 0.17
UPF1-205ENST00000598209 NSMFQ6X4W1 530 aa16.14■□□□□ 0.17
UPF1-205ENST00000598209 NUP133Q8WUM0 1156 aa16.14■□□□□ 0.17
UPF1-205ENST00000598209 FGD4Q96M96 766 aa16.14■□□□□ 0.17
UPF1-205ENST00000598209 MYL10Q9BUA6 226 aa16.14■□□□□ 0.17
UPF1-205ENST00000598209 NFIBO00712 420 aa16.13■□□□□ 0.17
UPF1-205ENST00000598209 EPB41L2O43491 1005 aaKnown RBP16.13■□□□□ 0.17
UPF1-205ENST00000598209 EXOSC10Q01780 885 aaKnown RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms