RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 UBA5Q9GZZ9 404 aa17.54■□□□□ 0.4
UPF1-202ENST00000594243 LY9Q9HBG7 655 aa17.54■□□□□ 0.4
UPF1-202ENST00000594243 TNRC18O15417 2968 aaPredicted RBP17.54■□□□□ 0.4
UPF1-202ENST00000594243 PLXNB2O15031 1838 aa17.54■□□□□ 0.4
UPF1-202ENST00000594243 WDR19Q8NEZ3 1342 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 SH2B2O14492 632 aaPredicted RBP17.53■□□□□ 0.4
UPF1-202ENST00000594243 CCL5P13501 91 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 SOX10P56693 466 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 SNAP25P60880 206 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 MTFR1Q15390 333 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 ADCK5Q3MIX3 580 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 MFSD14CQ5VZR4 134 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 NFXL1Q6ZNB6 911 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.53■□□□□ 0.4
UPF1-202ENST00000594243 ANKRD35Q8N283 1001 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 NPLOC4Q8TAT6 608 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 TRERF1Q96PN7 1200 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 MAP3K14Q99558 947 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 RNF208Q9H0X6 261 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 ACAD9Q9H845 621 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 SENP2Q9HC62 589 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 CCPG1Q9ULG6 757 aa17.53■□□□□ 0.4
UPF1-202ENST00000594243 DIS3Q9Y2L1 958 aaKnown RBP17.53■□□□□ 0.4
UPF1-202ENST00000594243 RPTORQ8N122 1335 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 PALM3A6NDB9 673 aaPredicted RBP17.52■□□□□ 0.4
UPF1-202ENST00000594243 KLRF2D3W0D1 207 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 COBLO75128 1261 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 ALAS1P13196 640 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 PSMA5P28066 241 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 RGS19P49795 217 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 EXOSC10Q01780 885 aaKnown RBP17.52■□□□□ 0.4
UPF1-202ENST00000594243 TROAPQ12815 778 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 CCL14Q16627 93 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 OLFML2BQ68BL8 750 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 ADGRF4Q8IZF3 695 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 HMX1Q9NP08 348 aaPredicted RBP17.52■□□□□ 0.4
UPF1-202ENST00000594243 HOMER2Q9NSB8 354 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 MAD2L2Q9UI95 211 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 SNX14Q9Y5W7 946 aa17.52■□□□□ 0.4
UPF1-202ENST00000594243 DHX16O60231 1041 aaKnown RBP17.51■□□□□ 0.39
UPF1-202ENST00000594243 DDAH1O94760 285 aa17.51■□□□□ 0.39
UPF1-202ENST00000594243 CALM1P0DP23 149 aa17.51■□□□□ 0.39
UPF1-202ENST00000594243 CALM2P0DP24 149 aa17.51■□□□□ 0.39
UPF1-202ENST00000594243 CALM3P0DP25 149 aa17.51■□□□□ 0.39
UPF1-202ENST00000594243 CAPN2P17655 700 aa17.51■□□□□ 0.39
UPF1-202ENST00000594243 GRM4Q14833 912 aa17.51■□□□□ 0.39
UPF1-202ENST00000594243 SYNE3Q6ZMZ3 975 aa17.51■□□□□ 0.39
UPF1-202ENST00000594243 ZNF654Q8IZM8 581 aa17.51■□□□□ 0.39
UPF1-202ENST00000594243 STAG2Q8N3U4 1231 aa17.51■□□□□ 0.39
UPF1-202ENST00000594243 NUP133Q8WUM0 1156 aa17.51■□□□□ 0.39
UPF1-202ENST00000594243 RNF146Q9NTX7 359 aa17.51■□□□□ 0.39
UPF1-202ENST00000594243 DOCK3Q8IZD9 2030 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 ZNF236Q9UL36 1845 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 PGK2P07205 417 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 GJB1P08034 283 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 KIF5BP33176 963 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 ZNF792Q3KQV3 632 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 CTCFLQ8NI51 663 aaPredicted RBP17.5■□□□□ 0.39
UPF1-202ENST00000594243 MAML3Q96JK9 1138 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 JAKMIP1Q96N16 626 aaKnown RBP17.5■□□□□ 0.39
UPF1-202ENST00000594243 LRRC2Q9BYS8 371 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 UNC93B1Q9H1C4 597 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 CPVLQ9H3G5 476 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 VAT1LQ9HCJ6 419 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 GPHNQ9NQX3 736 aaPredicted RBP17.5■□□□□ 0.39
UPF1-202ENST00000594243 FLRT1Q9NZU1 646 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 SLC12A7Q9Y666 1083 aa17.5■□□□□ 0.39
UPF1-202ENST00000594243 POTEFA5A3E0 1075 aa17.49■□□□□ 0.39
UPF1-202ENST00000594243 PRKAR2AP13861 404 aaKnown RBP17.49■□□□□ 0.39
UPF1-202ENST00000594243 FGD1P98174 961 aa17.49■□□□□ 0.39
UPF1-202ENST00000594243 CACNB2Q08289 660 aaPredicted RBP17.49■□□□□ 0.39
UPF1-202ENST00000594243 TRIM32Q13049 653 aa17.49■□□□□ 0.39
UPF1-202ENST00000594243 COL9A3Q14050 684 aaPredicted RBP17.49■□□□□ 0.39
UPF1-202ENST00000594243 CDC37Q16543 378 aaPredicted RBP17.49■□□□□ 0.39
UPF1-202ENST00000594243 MAP3K21Q5TCX8 1036 aa17.49■□□□□ 0.39
UPF1-202ENST00000594243 BLOC1S2Q6QNY1 142 aa17.49■□□□□ 0.39
UPF1-202ENST00000594243 SGMS1Q86VZ5 419 aa17.49■□□□□ 0.39
UPF1-202ENST00000594243 JMJD4Q9H9V9 463 aa17.49■□□□□ 0.39
UPF1-202ENST00000594243 PFASO15067 1338 aa17.48■□□□□ 0.39
UPF1-202ENST00000594243 DNAJC25-GNG10A0A024R161 153 aa17.48■□□□□ 0.39
UPF1-202ENST00000594243 GNAQP50148 359 aa17.48■□□□□ 0.39
UPF1-202ENST00000594243 MSL3Q8N5Y2 521 aaKnown RBP17.48■□□□□ 0.39
UPF1-202ENST00000594243 LZTS2Q9BRK4 669 aa17.48■□□□□ 0.39
UPF1-202ENST00000594243 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.48■□□□□ 0.391e-5■■■□□ 18
UPF1-202ENST00000594243 RIOX1Q9H6W3 641 aa17.48■□□□□ 0.39
UPF1-202ENST00000594243 PAK6Q9NQU5 681 aaPredicted RBP17.48■□□□□ 0.39
UPF1-202ENST00000594243 PDE4DIPQ5VU43 2346 aa17.48■□□□□ 0.39
UPF1-202ENST00000594243 SGPL1O95470 568 aa17.47■□□□□ 0.39
UPF1-202ENST00000594243 IGHA2P01877 340 aa17.47■□□□□ 0.39
UPF1-202ENST00000594243 EN2P19622 333 aaPredicted RBP17.47■□□□□ 0.39
UPF1-202ENST00000594243 SMARCA1P28370 1054 aa17.47■□□□□ 0.39
UPF1-202ENST00000594243 CYP2C19P33261 490 aa17.47■□□□□ 0.39
UPF1-202ENST00000594243 GJA8P48165 433 aa17.47■□□□□ 0.39
UPF1-202ENST00000594243 TRAF1Q13077 416 aa17.47■□□□□ 0.39
UPF1-202ENST00000594243 QRICH1Q2TAL8 776 aa17.47■□□□□ 0.39
UPF1-202ENST00000594243 MUM1L1Q5H9M0 696 aa17.47■□□□□ 0.39
UPF1-202ENST00000594243 ZNF467Q7Z7K2 595 aaPredicted RBP17.47■□□□□ 0.39
UPF1-202ENST00000594243 FBXO11Q86XK2 927 aa17.47■□□□□ 0.39
UPF1-202ENST00000594243 TINF2Q9BSI4 451 aa17.47■□□□□ 0.39
UPF1-202ENST00000594243 MYL10Q9BUA6 226 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms