RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 PLXNA1Q9UIW2 1896 aa17.02■□□□□ 0.32
VRK3-206ENST00000594090 ICAM1P05362 532 aa17.02■□□□□ 0.31
VRK3-206ENST00000594090 RGS19P49795 217 aa17.02■□□□□ 0.31
VRK3-206ENST00000594090 KCTD2Q14681 263 aa17.02■□□□□ 0.31
VRK3-206ENST00000594090 TMEM87BQ96K49 555 aa17.02■□□□□ 0.31
VRK3-206ENST00000594090 RNF208Q9H0X6 261 aa17.02■□□□□ 0.31
VRK3-206ENST00000594090 CPVLQ9H3G5 476 aa17.02■□□□□ 0.31
VRK3-206ENST00000594090 LY9Q9HBG7 655 aa17.02■□□□□ 0.31
VRK3-206ENST00000594090 HOMER2Q9NSB8 354 aa17.02■□□□□ 0.31
VRK3-206ENST00000594090 SLC5A4Q9NY91 659 aa17.02■□□□□ 0.31
VRK3-206ENST00000594090 FLRT1Q9NZU1 646 aa17.02■□□□□ 0.31
VRK3-206ENST00000594090 FBXO40Q9UH90 709 aa17.02■□□□□ 0.31
VRK3-206ENST00000594090 CCPG1Q9ULG6 757 aa17.02■□□□□ 0.31
VRK3-206ENST00000594090 SH2B2O14492 632 aaPredicted RBP17.01■□□□□ 0.31
VRK3-206ENST00000594090 PRKAR2AP13861 404 aaKnown RBP17.01■□□□□ 0.31
VRK3-206ENST00000594090 HSPA4P34932 840 aa17.01■□□□□ 0.31
VRK3-206ENST00000594090 KRT32Q14532 448 aa17.01■□□□□ 0.31
VRK3-206ENST00000594090 TKFCQ3LXA3 575 aa17.01■□□□□ 0.31
VRK3-206ENST00000594090 ADCK5Q3MIX3 580 aa17.01■□□□□ 0.31
VRK3-206ENST00000594090 KCNB2Q92953 911 aa17.01■□□□□ 0.31
VRK3-206ENST00000594090 NEK1Q96PY6 1258 aa17.01■□□□□ 0.31
VRK3-206ENST00000594090 UBA5Q9GZZ9 404 aa17.01■□□□□ 0.31
VRK3-206ENST00000594090 GPHNQ9NQX3 736 aaPredicted RBP17.01■□□□□ 0.31
VRK3-206ENST00000594090 RNF146Q9NTX7 359 aa17.01■□□□□ 0.31
VRK3-206ENST00000594090 EPB41L2O43491 1005 aaKnown RBP17■□□□□ 0.31
VRK3-206ENST00000594090 IGHA2P01877 340 aa17■□□□□ 0.31
VRK3-206ENST00000594090 PGK2P07205 417 aa17■□□□□ 0.31
VRK3-206ENST00000594090 ALAS1P13196 640 aa17■□□□□ 0.31
VRK3-206ENST00000594090 TAL1P17542 331 aaPredicted RBP17■□□□□ 0.31
VRK3-206ENST00000594090 CACNB2Q08289 660 aaPredicted RBP17■□□□□ 0.31
VRK3-206ENST00000594090 GRM4Q14833 912 aa17■□□□□ 0.31
VRK3-206ENST00000594090 MFSD14CQ5VZR4 134 aa17■□□□□ 0.31
VRK3-206ENST00000594090 OLFML2BQ68BL8 750 aa17■□□□□ 0.31
VRK3-206ENST00000594090 STAG2Q8N3U4 1231 aa17■□□□□ 0.31
VRK3-206ENST00000594090 MAML3Q96JK9 1138 aa17■□□□□ 0.31
VRK3-206ENST00000594090 TRERF1Q96PN7 1200 aa17■□□□□ 0.31
VRK3-206ENST00000594090 XRN2Q9H0D6 950 aaKnown RBP eCLIP17■□□□□ 0.31
VRK3-206ENST00000594090 ACAD9Q9H845 621 aa17■□□□□ 0.31
VRK3-206ENST00000594090 PAK6Q9NQU5 681 aaPredicted RBP17■□□□□ 0.31
VRK3-206ENST00000594090 MAD2L2Q9UI95 211 aa17■□□□□ 0.31
VRK3-206ENST00000594090 RPTORQ8N122 1335 aa17■□□□□ 0.31
VRK3-206ENST00000594090 DNAJC25-GNG10A0A024R161 153 aa16.99■□□□□ 0.31
VRK3-206ENST00000594090 GJB1P08034 283 aa16.99■□□□□ 0.31
VRK3-206ENST00000594090 EN2P19622 333 aaPredicted RBP16.99■□□□□ 0.31
VRK3-206ENST00000594090 TROAPQ12815 778 aa16.99■□□□□ 0.31
VRK3-206ENST00000594090 ZNF792Q3KQV3 632 aa16.99■□□□□ 0.31
VRK3-206ENST00000594090 CATIPQ7Z7H3 387 aa16.99■□□□□ 0.31
VRK3-206ENST00000594090 ADGRF4Q8IZF3 695 aa16.99■□□□□ 0.31
VRK3-206ENST00000594090 ANKRD35Q8N283 1001 aa16.99■□□□□ 0.31
VRK3-206ENST00000594090 LRRC2Q9BYS8 371 aa16.99■□□□□ 0.31
VRK3-206ENST00000594090 HMX1Q9NP08 348 aaPredicted RBP16.99■□□□□ 0.31
VRK3-206ENST00000594090 DIS3Q9Y2L1 958 aaKnown RBP16.99■□□□□ 0.31
VRK3-206ENST00000594090 SNX14Q9Y5W7 946 aa16.99■□□□□ 0.31
VRK3-206ENST00000594090 WDR19Q8NEZ3 1342 aa16.99■□□□□ 0.31
VRK3-206ENST00000594090 PALM3A6NDB9 673 aaPredicted RBP16.98■□□□□ 0.31
VRK3-206ENST00000594090 CYP2C19P33261 490 aa16.98■□□□□ 0.31
VRK3-206ENST00000594090 GJA8P48165 433 aa16.98■□□□□ 0.31
VRK3-206ENST00000594090 CDC37Q16543 378 aaPredicted RBP16.98■□□□□ 0.31
VRK3-206ENST00000594090 MUM1L1Q5H9M0 696 aa16.98■□□□□ 0.31
VRK3-206ENST00000594090 ZNF654Q8IZM8 581 aa16.98■□□□□ 0.31
VRK3-206ENST00000594090 TMTC2Q8N394 836 aa16.98■□□□□ 0.31
VRK3-206ENST00000594090 SHISA4Q96DD7 197 aa16.98■□□□□ 0.31
VRK3-206ENST00000594090 DDX11Q96FC9 970 aa16.98■□□□□ 0.31
VRK3-206ENST00000594090 PNMA2Q9UL42 364 aa16.98■□□□□ 0.31
VRK3-206ENST00000594090 SMCHD1A6NHR9 2005 aa16.97■□□□□ 0.31
VRK3-206ENST00000594090 KLRF2D3W0D1 207 aa16.97■□□□□ 0.31
VRK3-206ENST00000594090 DHX16O60231 1041 aaKnown RBP16.97■□□□□ 0.31
VRK3-206ENST00000594090 DDAH1O94760 285 aa16.97■□□□□ 0.31
VRK3-206ENST00000594090 LIFRP42702 1097 aa16.97■□□□□ 0.31
VRK3-206ENST00000594090 NFXL1Q6ZNB6 911 aa16.97■□□□□ 0.31
VRK3-206ENST00000594090 DHX32Q7L7V1 743 aaKnown RBP16.97■□□□□ 0.31
VRK3-206ENST00000594090 U2AF1L4Q8WU68 220 aaKnown RBP16.97■□□□□ 0.31
VRK3-206ENST00000594090 DEFB118Q96PH6 123 aa16.97■□□□□ 0.31
VRK3-206ENST00000594090 MYL10Q9BUA6 226 aa16.97■□□□□ 0.31
VRK3-206ENST00000594090 JMJD4Q9H9V9 463 aa16.97■□□□□ 0.31
VRK3-206ENST00000594090 A1CFQ9NQ94 594 aaKnown RBP16.97■□□□□ 0.31
VRK3-206ENST00000594090 PFASO15067 1338 aa16.97■□□□□ 0.31
VRK3-206ENST00000594090 CCDC69A6NI79 296 aa16.96■□□□□ 0.31
VRK3-206ENST00000594090 HMGB1P09429 215 aaKnown RBP16.96■□□□□ 0.31
VRK3-206ENST00000594090 CCND3P30281 292 aaPredicted RBP16.96■□□□□ 0.31
VRK3-206ENST00000594090 EXOSC10Q01780 885 aaKnown RBP16.96■□□□□ 0.31
VRK3-206ENST00000594090 SGMS1Q86VZ5 419 aa16.96■□□□□ 0.31
VRK3-206ENST00000594090 NUP133Q8WUM0 1156 aa16.96■□□□□ 0.31
VRK3-206ENST00000594090 TCEANC2Q96MN5 208 aa16.96■□□□□ 0.31
VRK3-206ENST00000594090 JAKMIP1Q96N16 626 aaKnown RBP16.96■□□□□ 0.31
VRK3-206ENST00000594090 MAP3K14Q99558 947 aa16.96■□□□□ 0.31
VRK3-206ENST00000594090 USP26Q9BXU7 913 aa16.96■□□□□ 0.31
VRK3-206ENST00000594090 MYH6P13533 1939 aa16.96■□□□□ 0.31
VRK3-206ENST00000594090 FRMPD3Q5JV73 1810 aa16.96■□□□□ 0.31
VRK3-206ENST00000594090 MKI67P46013 3256 aaKnown RBP16.96■□□□□ 0.31
VRK3-206ENST00000594090 KIAA0100Q14667 2235 aaKnown RBP16.96■□□□□ 0.3
VRK3-206ENST00000594090 SGPL1O95470 568 aa16.96■□□□□ 0.3
VRK3-206ENST00000594090 CYBAP13498 195 aa16.96■□□□□ 0.3
VRK3-206ENST00000594090 QRICH1Q2TAL8 776 aa16.96■□□□□ 0.3
VRK3-206ENST00000594090 FGD4Q96M96 766 aa16.96■□□□□ 0.3
VRK3-206ENST00000594090 VAT1LQ9HCJ6 419 aa16.96■□□□□ 0.3
VRK3-206ENST00000594090 LCTP09848 1927 aa16.95■□□□□ 0.3
VRK3-206ENST00000594090 NFIBO00712 420 aa16.95■□□□□ 0.3
VRK3-206ENST00000594090 SLC35G1Q2M3R5 365 aa16.95■□□□□ 0.3
VRK3-206ENST00000594090 USH1GQ495M9 461 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms