RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 NEK1Q96PY6 1258 aa13.9□□□□□ -0.18
LIG3-213ENST00000590630 MMP19Q99542 508 aa13.9□□□□□ -0.18
LIG3-213ENST00000590630 TMEM106CQ9BVX2 250 aa13.9□□□□□ -0.18
LIG3-213ENST00000590630 LY9Q9HBG7 655 aa13.9□□□□□ -0.18
LIG3-213ENST00000590630 RIPK3Q9Y572 518 aa13.9□□□□□ -0.18
LIG3-213ENST00000590630 TNRC18O15417 2968 aaPredicted RBP13.89□□□□□ -0.19
LIG3-213ENST00000590630 EIF5BO60841 1220 aaKnown RBP13.89□□□□□ -0.19
LIG3-213ENST00000590630 LIFRP42702 1097 aa13.89□□□□□ -0.19
LIG3-213ENST00000590630 SLC4A3P48751 1232 aa13.89□□□□□ -0.19
LIG3-213ENST00000590630 SOX10P56693 466 aa13.89□□□□□ -0.19
LIG3-213ENST00000590630 TROAPQ12815 778 aa13.89□□□□□ -0.19
LIG3-213ENST00000590630 CCDC174Q6PII3 467 aa13.89□□□□□ -0.19
LIG3-213ENST00000590630 AGBL1Q96MI9 1066 aa13.89□□□□□ -0.19
LIG3-213ENST00000590630 ACAD9Q9H845 621 aa13.89□□□□□ -0.19
LIG3-213ENST00000590630 CCPG1Q9ULG6 757 aa13.89□□□□□ -0.19
LIG3-213ENST00000590630 BAZ2BQ9UIF8 2168 aaKnown RBP13.89□□□□□ -0.19
LIG3-213ENST00000590630 SH2B2O14492 632 aaPredicted RBP13.88□□□□□ -0.19
LIG3-213ENST00000590630 COBLO75128 1261 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 DDAH1O94760 285 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 MYCP01106 439 aaPredicted RBP13.88□□□□□ -0.19
LIG3-213ENST00000590630 CCL5P13501 91 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 SNAP25P60880 206 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 GRM4Q14833 912 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 MTFR1Q15390 333 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 CCL14Q16627 93 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 ADCK5Q3MIX3 580 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 MAP3K21Q5TCX8 1036 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 OLFML2BQ68BL8 750 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 DHX32Q7L7V1 743 aaKnown RBP13.88□□□□□ -0.19
LIG3-213ENST00000590630 NPLOC4Q8TAT6 608 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 MAP3K14Q99558 947 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 RNF208Q9H0X6 261 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 SENP2Q9HC62 589 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 HOMER2Q9NSB8 354 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 RNF146Q9NTX7 359 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 MAD2L2Q9UI95 211 aa13.88□□□□□ -0.19
LIG3-213ENST00000590630 DIS3Q9Y2L1 958 aaKnown RBP13.88□□□□□ -0.19
LIG3-213ENST00000590630 PALM3A6NDB9 673 aaPredicted RBP13.87□□□□□ -0.19
LIG3-213ENST00000590630 CCDC69A6NI79 296 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 KLRF2D3W0D1 207 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 GJB1P08034 283 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 ALAS1P13196 640 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 PRKAR2AP13861 404 aaKnown RBP13.87□□□□□ -0.19
LIG3-213ENST00000590630 EXOSC10Q01780 885 aaKnown RBP13.87□□□□□ -0.19
LIG3-213ENST00000590630 COL9A3Q14050 684 aaPredicted RBP13.87□□□□□ -0.19
LIG3-213ENST00000590630 MFSD14CQ5VZR4 134 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 NFXL1Q6ZNB6 911 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 ADGRF4Q8IZF3 695 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 ZNF654Q8IZM8 581 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 ANKRD35Q8N283 1001 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 DDX11Q96FC9 970 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 TRERF1Q96PN7 1200 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 USP26Q9BXU7 913 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 UBA5Q9GZZ9 404 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 UNC93B1Q9H1C4 597 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 HMX1Q9NP08 348 aaPredicted RBP13.87□□□□□ -0.19
LIG3-213ENST00000590630 PAK6Q9NQU5 681 aaPredicted RBP13.87□□□□□ -0.19
LIG3-213ENST00000590630 FLRT1Q9NZU1 646 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 SNX14Q9Y5W7 946 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 MCM3APO60318 1980 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 PFASO15067 1338 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 RPTORQ8N122 1335 aa13.87□□□□□ -0.19
LIG3-213ENST00000590630 DNAJC25-GNG10A0A024R161 153 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 POTEFA5A3E0 1075 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 DHX16O60231 1041 aaKnown RBP13.86□□□□□ -0.19
LIG3-213ENST00000590630 IGHA2P01877 340 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 PGK2P07205 417 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 CALM1P0DP23 149 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 CALM2P0DP24 149 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 CALM3P0DP25 149 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 KIF5BP33176 963 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 RGS19P49795 217 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 ZNF792Q3KQV3 632 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 SGMS1Q86VZ5 419 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 STAG2Q8N3U4 1231 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 CTCFLQ8NI51 663 aaPredicted RBP13.86□□□□□ -0.19
LIG3-213ENST00000590630 MAML3Q96JK9 1138 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 JAKMIP1Q96N16 626 aaKnown RBP13.86□□□□□ -0.19
LIG3-213ENST00000590630 CPVLQ9H3G5 476 aa13.86□□□□□ -0.19
LIG3-213ENST00000590630 GPHNQ9NQX3 736 aaPredicted RBP13.86□□□□□ -0.19
LIG3-213ENST00000590630 FRMPD3Q5JV73 1810 aa13.85□□□□□ -0.19
LIG3-213ENST00000590630 CAPN2P17655 700 aa13.85□□□□□ -0.19
LIG3-213ENST00000590630 PSMA5P28066 241 aa13.85□□□□□ -0.19
LIG3-213ENST00000590630 GJA8P48165 433 aa13.85□□□□□ -0.19
LIG3-213ENST00000590630 CACNB2Q08289 660 aaPredicted RBP13.85□□□□□ -0.19
LIG3-213ENST00000590630 TRIM32Q13049 653 aa13.85□□□□□ -0.19
LIG3-213ENST00000590630 CDC37Q16543 378 aaPredicted RBP13.85□□□□□ -0.19
LIG3-213ENST00000590630 MSL3Q8N5Y2 521 aaKnown RBP13.85□□□□□ -0.19
LIG3-213ENST00000590630 NUP133Q8WUM0 1156 aa13.85□□□□□ -0.19
LIG3-213ENST00000590630 LRRC2Q9BYS8 371 aa13.85□□□□□ -0.19
LIG3-213ENST00000590630 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.85□□□□□ -0.19
LIG3-213ENST00000590630 JMJD4Q9H9V9 463 aa13.85□□□□□ -0.19
LIG3-213ENST00000590630 A1CFQ9NQ94 594 aaKnown RBP13.85□□□□□ -0.19
LIG3-213ENST00000590630 SLC12A7Q9Y666 1083 aa13.85□□□□□ -0.19
LIG3-213ENST00000590630 LCTP09848 1927 aa13.85□□□□□ -0.19
LIG3-213ENST00000590630 DNAH12Q6ZR08 3092 aa13.85□□□□□ -0.19
LIG3-213ENST00000590630 QRICH1Q2TAL8 776 aa13.84□□□□□ -0.19
LIG3-213ENST00000590630 MUM1L1Q5H9M0 696 aa13.84□□□□□ -0.19
LIG3-213ENST00000590630 BLOC1S2Q6QNY1 142 aa13.84□□□□□ -0.19
LIG3-213ENST00000590630 SYNE3Q6ZMZ3 975 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms