RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 IQCA1Q86XH1 822 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 DGKHQ86XP1 1220 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 ARRDC4Q8NCT1 418 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 TRPV1Q8NER1 839 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 MYLIPQ8WY64 445 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 MMP19Q99542 508 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 KRT23Q9C075 422 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 STX8Q9UNK0 236 aa12.37□□□□□ -0.43
LIG3-212ENST00000590181 LOC102724159A0A0B4J2E5 919 aa12.36□□□□□ -0.43
LIG3-212ENST00000590181 CTDSPL2Q05D32 466 aa12.36□□□□□ -0.43
LIG3-212ENST00000590181 PWP2Q15269 919 aaKnown RBP12.36□□□□□ -0.43
LIG3-212ENST00000590181 SHHQ15465 462 aa12.36□□□□□ -0.43
LIG3-212ENST00000590181 FAM47AQ5JRC9 791 aa12.36□□□□□ -0.43
LIG3-212ENST00000590181 GJC2Q5T442 439 aaPredicted RBP12.36□□□□□ -0.43
LIG3-212ENST00000590181 VPS53Q5VIR6 699 aa12.36□□□□□ -0.43
LIG3-212ENST00000590181 CWC27Q6UX04 472 aaKnown RBP12.36□□□□□ -0.43
LIG3-212ENST00000590181 CLEC10AQ8IUN9 316 aa12.36□□□□□ -0.43
LIG3-212ENST00000590181 REPS2Q8NFH8 660 aa12.36□□□□□ -0.43
LIG3-212ENST00000590181 NPLOC4Q8TAT6 608 aa12.36□□□□□ -0.43
LIG3-212ENST00000590181 IL17RBQ9NRM6 502 aa12.36□□□□□ -0.43
LIG3-212ENST00000590181 TOMM22Q9NS69 142 aa12.36□□□□□ -0.43
LIG3-212ENST00000590181 MUC3AQ02505 3323 aa12.36□□□□□ -0.43
LIG3-212ENST00000590181 TMEM232C9JQI7 657 aa12.35□□□□□ -0.43
LIG3-212ENST00000590181 SEPT4O43236 478 aa12.35□□□□□ -0.43
LIG3-212ENST00000590181 MYCNP04198 464 aaPredicted RBP12.35□□□□□ -0.43
LIG3-212ENST00000590181 FOSL2P15408 326 aa12.35□□□□□ -0.43
LIG3-212ENST00000590181 TRIM60Q495X7 471 aa12.35□□□□□ -0.43
LIG3-212ENST00000590181 GPATCH4Q5T3I0 446 aaKnown RBP12.35□□□□□ -0.43
LIG3-212ENST00000590181 SNRNP48Q6IEG0 339 aaKnown RBP12.35□□□□□ -0.43
LIG3-212ENST00000590181 MAMDC4Q6UXC1 1216 aa12.35□□□□□ -0.43
LIG3-212ENST00000590181 BTNL9Q6UXG8 535 aa12.35□□□□□ -0.43
LIG3-212ENST00000590181 ZNF589Q86UQ0 364 aaPredicted RBP12.35□□□□□ -0.43
LIG3-212ENST00000590181 STK11IPQ8N1F8 1099 aa12.35□□□□□ -0.43
LIG3-212ENST00000590181 ANKS1AQ92625 1134 aa12.35□□□□□ -0.43
LIG3-212ENST00000590181 DDX11Q96FC9 970 aa12.35□□□□□ -0.43
LIG3-212ENST00000590181 PDLIM7Q9NR12 457 aa12.35□□□□□ -0.43
LIG3-212ENST00000590181 SYNGAP1Q96PV0 1343 aa12.35□□□□□ -0.43
LIG3-212ENST00000590181 CHD9Q3L8U1 2897 aa12.34□□□□□ -0.43
LIG3-212ENST00000590181 SMAD3P84022 425 aaKnown RBP12.34□□□□□ -0.43
LIG3-212ENST00000590181 ZNF792Q3KQV3 632 aa12.34□□□□□ -0.43
LIG3-212ENST00000590181 ANO1Q5XXA6 986 aa12.34□□□□□ -0.43
LIG3-212ENST00000590181 CENPQQ7L2Z9 268 aaPredicted RBP12.34□□□□□ -0.43
LIG3-212ENST00000590181 BADQ92934 168 aa12.34□□□□□ -0.43
LIG3-212ENST00000590181 KIFC2Q96AC6 838 aa12.34□□□□□ -0.43
LIG3-212ENST00000590181 MAML3Q96JK9 1138 aa12.34□□□□□ -0.43
LIG3-212ENST00000590181 TINF2Q9BSI4 451 aa12.34□□□□□ -0.43
LIG3-212ENST00000590181 TTYH1Q9H313 450 aaPredicted RBP12.34□□□□□ -0.43
LIG3-212ENST00000590181 SEMA6BQ9H3T3 888 aa12.34□□□□□ -0.43
LIG3-212ENST00000590181 FBXO28Q9NVF7 368 aa12.34□□□□□ -0.43
LIG3-212ENST00000590181 CNPY2Q9Y2B0 182 aa12.34□□□□□ -0.43
LIG3-212ENST00000590181 U3KPZ7 1027 aaPredicted RBP12.34□□□□□ -0.43
LIG3-212ENST00000590181 BDP1A6H8Y1 2624 aa12.34□□□□□ -0.43
LIG3-212ENST00000590181 LAMA4Q16363 1823 aa12.33□□□□□ -0.44
LIG3-212ENST00000590181 COBLO75128 1261 aa12.33□□□□□ -0.44
LIG3-212ENST00000590181 MCCP23508 829 aa12.33□□□□□ -0.44
LIG3-212ENST00000590181 TRDNQ13061 729 aa12.33□□□□□ -0.44
LIG3-212ENST00000590181 TRAF1Q13077 416 aa12.33□□□□□ -0.44
LIG3-212ENST00000590181 IKQ13123 557 aaPredicted RBP12.33□□□□□ -0.44
LIG3-212ENST00000590181 SNX17Q15036 470 aa12.33□□□□□ -0.44
LIG3-212ENST00000590181 SLC39A5Q6ZMH5 540 aa12.33□□□□□ -0.44
LIG3-212ENST00000590181 PRDM6Q9NQX0 595 aa12.33□□□□□ -0.44
LIG3-212ENST00000590181 GBF1Q92538 1859 aa12.33□□□□□ -0.44
LIG3-212ENST00000590181 DNAJC25-GNG10A0A024R161 153 aa12.32□□□□□ -0.44
LIG3-212ENST00000590181 RRP12Q5JTH9 1297 aaKnown RBP12.32□□□□□ -0.44
LIG3-212ENST00000590181 SAMD1Q6SPF0 538 aaPredicted RBP12.32□□□□□ -0.44
LIG3-212ENST00000590181 LRRC47Q8N1G4 583 aaKnown RBP12.32□□□□□ -0.44
LIG3-212ENST00000590181 ANKRD35Q8N283 1001 aa12.32□□□□□ -0.44
LIG3-212ENST00000590181 RNPC3Q96LT9 517 aaKnown RBP12.32□□□□□ -0.44
LIG3-212ENST00000590181 MPHOSPH6Q99547 160 aaKnown RBP12.32□□□□□ -0.44
LIG3-212ENST00000590181 NUP88Q99567 741 aaPredicted RBP12.32□□□□□ -0.44
LIG3-212ENST00000590181 TMEM47Q9BQJ4 181 aa12.32□□□□□ -0.44
LIG3-212ENST00000590181 MTA3Q9BTC8 594 aa12.32□□□□□ -0.44
LIG3-212ENST00000590181 ACAD9Q9H845 621 aa12.32□□□□□ -0.44
LIG3-212ENST00000590181 SMCHD1A6NHR9 2005 aa12.32□□□□□ -0.44
LIG3-212ENST00000590181 ASB14A6NK59 587 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 B4DLN1 442 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 ICAM1P05362 532 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 SNHG28P0DPA3 235 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 CHMLP26374 656 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 ADCYAP1R1P41586 468 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 MRPL12P52815 198 aaKnown RBP12.31□□□□□ -0.44
LIG3-212ENST00000590181 KIAA1211Q6ZU35 1233 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 SH3RF1Q7Z6J0 888 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 CPXCR1Q8N123 301 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 RGS22Q8NE09 1264 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 FERMT2Q96AC1 680 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 UBAC1Q9BSL1 405 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 ABHD16BQ9H3Z7 469 aa12.31□□□□□ -0.44
LIG3-212ENST00000590181 TMEM265A0A087WTH1 108 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 TRIM43BA6NCK2 446 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 RARBP10826 455 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 AKR1A1P14550 325 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 PDE4AP27815 886 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 SART3Q15020 963 aaKnown RBP12.3□□□□□ -0.44
LIG3-212ENST00000590181 LRRC41Q15345 812 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 C1orf53Q5VUE5 145 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 RNF180Q86T96 592 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 SAMD3Q8N6K7 520 aa12.3□□□□□ -0.44
LIG3-212ENST00000590181 SYMPKQ92797 1274 aaKnown RBP12.3□□□□□ -0.44
LIG3-212ENST00000590181 TRIM43Q96BQ3 446 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms