RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 TNNI2P48788 182 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 NLRP5P59047 1200 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 CEBPZQ03701 1054 aaKnown RBP11.92□□□□□ -0.5
LIG3-203ENST00000585370 GPATCH4Q5T3I0 446 aaKnown RBP11.92□□□□□ -0.5
LIG3-203ENST00000585370 ZFPM1Q8IX07 1006 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 CMTR1Q8N1G2 835 aaKnown RBP11.92□□□□□ -0.5
LIG3-203ENST00000585370 CD99L2Q8TCZ2 262 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 BRI3BPQ8WY22 251 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 RRP36Q96EU6 259 aaKnown RBP11.92□□□□□ -0.5
LIG3-203ENST00000585370 CABP5Q9NP86 173 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 GJB4Q9NTQ9 266 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 CLIP2Q9UDT6 1046 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 PCDHA7Q9UN72 937 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 KCNJ14Q9UNX9 436 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 CLIC4Q9Y696 253 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 OTOFQ9HC10 1997 aa11.92□□□□□ -0.5
LIG3-203ENST00000585370 SYCE3A1L190 88 aa11.91□□□□□ -0.5
LIG3-203ENST00000585370 CMA1P23946 247 aa11.91□□□□□ -0.5
LIG3-203ENST00000585370 FAM160A1Q05DH4 1040 aa11.91□□□□□ -0.5
LIG3-203ENST00000585370 SH3BP5LQ7L8J4 393 aa11.91□□□□□ -0.5
LIG3-203ENST00000585370 CCAR1Q8IX12 1150 aaKnown RBP11.91□□□□□ -0.5
LIG3-203ENST00000585370 STAG2Q8N3U4 1231 aa11.91□□□□□ -0.5
LIG3-203ENST00000585370 MRPS27Q92552 414 aaKnown RBP11.91□□□□□ -0.5
LIG3-203ENST00000585370 ERO1AQ96HE7 468 aa11.91□□□□□ -0.5
LIG3-203ENST00000585370 NUP62CLQ9H1M0 184 aa11.91□□□□□ -0.5
LIG3-203ENST00000585370 TSPY26PQ9H489 355 aa11.91□□□□□ -0.5
LIG3-203ENST00000585370 RIOX1Q9H6W3 641 aa11.91□□□□□ -0.5
LIG3-203ENST00000585370 SEC63Q9UGP8 760 aaKnown RBP11.91□□□□□ -0.5
LIG3-203ENST00000585370 PTPN22Q9Y2R2 807 aa11.91□□□□□ -0.5
LIG3-203ENST00000585370 CCL15-CCL14A0A0B4J2E2 113 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 MPHOSPH10O00566 681 aaKnown RBP11.9□□□□□ -0.5
LIG3-203ENST00000585370 CUTAO60888 179 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 PDHBP11177 359 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 GTF2A2P52657 109 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 SP3Q02447 781 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 CCL15Q16663 113 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 ABCB5Q2M3G0 1257 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 GAS2L3Q86XJ1 694 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 FAM43AQ8N2R8 423 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 PIAS4Q8N2W9 510 aaPredicted RBP11.9□□□□□ -0.5
LIG3-203ENST00000585370 DAGLBQ8NCG7 672 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 DCAF4Q8WV16 495 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 ANP32BQ92688 251 aaKnown RBP11.9□□□□□ -0.5
LIG3-203ENST00000585370 OTUD5Q96G74 571 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 TNMDQ9H2S6 317 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 CLSTN2Q9H4D0 955 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 BARHL2Q9NY43 387 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 DACT1Q9NYF0 836 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 VPS54Q9P1Q0 977 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 PCDHA4Q9UN74 947 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 CSADQ9Y600 493 aa11.9□□□□□ -0.5
LIG3-203ENST00000585370 MYH15Q9Y2K3 1946 aa11.9□□□□□ -0.51
LIG3-203ENST00000585370 POTEFA5A3E0 1075 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 SPDYE5A6NIY4 337 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 TRIM75PA6NK02 468 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 CAVIN2O95810 425 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 LIG1P18858 919 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 GNA11P29992 359 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 ZNF543Q08ER8 600 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 PTPAQ15257 358 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 UVSSAQ2YD98 709 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 PRPF38BQ5VTL8 546 aaKnown RBP11.89□□□□□ -0.51
LIG3-203ENST00000585370 RBM43Q6ZSC3 357 aaKnown RBP11.89□□□□□ -0.51
LIG3-203ENST00000585370 BLIDQ8IZY5 108 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 ZNF579Q8NAF0 562 aaKnown RBP11.89□□□□□ -0.51
LIG3-203ENST00000585370 ZKSCAN4Q969J2 545 aaPredicted RBP11.89□□□□□ -0.51
LIG3-203ENST00000585370 DNAJC18Q9H819 358 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 EFCC1Q9HA90 598 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.89□□□□□ -0.51
LIG3-203ENST00000585370 GINM1Q9NU53 330 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 SNCAIPQ9Y6H5 919 aa11.89□□□□□ -0.51
LIG3-203ENST00000585370 FAM237AA0A1B0GTK4 181 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 ESYT2A0FGR8 921 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 USP17L5A8MUK1 530 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 CYTH3O43739 400 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 KINO60870 393 aaKnown RBP11.88□□□□□ -0.51
LIG3-203ENST00000585370 CCDC192P0DO97 292 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 XRCC6P12956 609 aaKnown RBP eCLIP11.88□□□□□ -0.51
LIG3-203ENST00000585370 MAP3K10Q02779 954 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 TAF1CQ15572 869 aaPredicted RBP11.88□□□□□ -0.51
LIG3-203ENST00000585370 AXDND1Q5T1B0 1012 aaPredicted RBP11.88□□□□□ -0.51
LIG3-203ENST00000585370 USP17L2Q6R6M4 530 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 MIGA2Q7L4E1 593 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 ERO1BQ86YB8 467 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 KRI1Q8N9T8 703 aaKnown RBP11.88□□□□□ -0.51
LIG3-203ENST00000585370 FSIP1Q8NA03 581 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 GMCL1P1Q8NEA9 526 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 ENGASEQ8NFI3 743 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 TNFRSF25Q93038 417 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 TIGD1Q96MW7 591 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 WRNIP1Q96S55 665 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 FTOQ9C0B1 505 aaKnown RBP eCLIP11.88□□□□□ -0.51
LIG3-203ENST00000585370 GLT8D2Q9H1C3 349 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 ZFYVE28Q9HCC9 887 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 C6orf50Q9HD87 102 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 MYH6P13533 1939 aa11.88□□□□□ -0.51
LIG3-203ENST00000585370 PNMA6FA0A0J9YX94 578 aa11.87□□□□□ -0.51
LIG3-203ENST00000585370 hCG_1642624A0A1W2PR95 340 aa11.87□□□□□ -0.51
LIG3-203ENST00000585370 STXBP3O00186 592 aa11.87□□□□□ -0.51
LIG3-203ENST00000585370 IRF6O14896 467 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms