RNA–Protein interactions for RNA: ENST00000577827.5

PTPRM-205, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 4,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-205ENST00000577827 CEP63Q96MT8 703 aa11.44□□□□□ -0.58
PTPRM-205ENST00000577827 ADGRG1Q9Y653 693 aa11.44□□□□□ -0.58
PTPRM-205ENST00000577827 SMCO2A6NFE2 343 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 HEXIM1O94992 359 aaKnown RBP11.43□□□□□ -0.58
PTPRM-205ENST00000577827 GAS8O95995 478 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 XRCC5P13010 732 aaKnown RBP11.43□□□□□ -0.58
PTPRM-205ENST00000577827 SARNPP82979 210 aaKnown RBP11.43□□□□□ -0.58
PTPRM-205ENST00000577827 SEMA3FQ13275 785 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 KRT31Q15323 416 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 CCDC105Q8IYK2 499 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 RAB3IPQ96QF0 476 aaPredicted RBP11.43□□□□□ -0.58
PTPRM-205ENST00000577827 RIC8AQ9NPQ8 531 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 ASIC3Q9UHC3 531 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 CCNE1P24864 410 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 ADORA1P30542 326 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 NEDD9Q14511 834 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 USPL1Q5W0Q7 1092 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 ZNF710Q8N1W2 664 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 VEZTQ9HBM0 779 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 ARMCX3Q9UH62 379 aaPredicted RBP11.43□□□□□ -0.58
PTPRM-205ENST00000577827 HMGB1P1B2RPK0 211 aaPredicted RBP11.43□□□□□ -0.58
PTPRM-205ENST00000577827 PRPF3O43395 683 aaKnown RBP11.43□□□□□ -0.58
PTPRM-205ENST00000577827 LTKP29376 864 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 RFC4P35249 363 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 TCP11X2Q5H9J9 407 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 ORAI2Q96SN7 254 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 CNOT10Q9H9A5 744 aaKnown RBP11.43□□□□□ -0.58
PTPRM-205ENST00000577827 PSD3Q9NYI0 1048 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 KLHL14Q9P2G3 628 aa11.43□□□□□ -0.58
PTPRM-205ENST00000577827 EIF3CLB5ME19 914 aaKnown RBP11.42□□□□□ -0.58
PTPRM-205ENST00000577827 BUB1O43683 1085 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 NEBLO76041 1014 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 INF2Q27J81 1249 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 CCDC38Q502W7 563 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 PNMA1Q8ND90 353 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 TSNARE1Q96NA8 513 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 RUNDC3BQ96NL0 473 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 EIF3CQ99613 913 aaKnown RBP11.42□□□□□ -0.58
PTPRM-205ENST00000577827 PUS3Q9BZE2 481 aaKnown RBP11.42□□□□□ -0.58
PTPRM-205ENST00000577827 ATP8A2Q9NTI2 1148 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 HIP1RO75146 1068 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 CIB2O75838 187 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 IFT88Q13099 833 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 GRAMD1CQ8IYS0 662 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 CCDC197Q8NCU1 140 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 CRB1P82279 1406 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 LUC7L3O95232 432 aaKnown RBP11.42□□□□□ -0.58
PTPRM-205ENST00000577827 NR5A1Q13285 461 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 NNTQ13423 1086 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 PUS7LQ9H0K6 701 aaKnown RBP11.42□□□□□ -0.58
PTPRM-205ENST00000577827 NHEJ1Q9H9Q4 299 aaPredicted RBP11.42□□□□□ -0.58
PTPRM-205ENST00000577827 ABHD10Q9NUJ1 306 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 RIPOR2Q9Y4F9 1068 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 PCDHB6Q9Y5E3 794 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 PICALMQ13492 652 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 FAM26FQ5R3K3 315 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 C10orf76Q5T2E6 689 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 KCTD16Q68DU8 428 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 NCAPH2Q6IBW4 605 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 NELFCDQ8IXH7 590 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 SMYD4Q8IYR2 804 aaPredicted RBP11.42□□□□□ -0.58
PTPRM-205ENST00000577827 MSANTD4Q8NCY6 345 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 L2HGDHQ9H9P8 463 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 EPB41L5Q9HCM4 733 aa11.42□□□□□ -0.58
PTPRM-205ENST00000577827 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.42□□□□□ -0.58
PTPRM-205ENST00000577827 TMEM232C9JQI7 657 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 POLR2FP61218 127 aaKnown RBP11.41□□□□□ -0.58
PTPRM-205ENST00000577827 RNF10Q8N5U6 811 aaKnown RBP11.41□□□□□ -0.58
PTPRM-205ENST00000577827 MB21D1Q8N884 522 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 RUBCNQ92622 972 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 PBKQ96KB5 322 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 KRT12Q99456 494 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 VIPAS39Q9H9C1 493 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 CEP152O94986 1710 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 H7C1W4 665 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 NR1D1P20393 614 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 PHKA1P46020 1223 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 EHHADHQ08426 723 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 PAXIP1Q6ZW49 1069 aaPredicted RBP11.41□□□□□ -0.58
PTPRM-205ENST00000577827 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.41□□□□□ -0.581e-7■■□□□ 12.4
PTPRM-205ENST00000577827 FUCA2Q9BTY2 467 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 SYNCQ9H7C4 482 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 ZSWIM5Q9P217 1185 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 STK17AQ9UEE5 414 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 CLGNO14967 610 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 STX2P32856 288 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 RASSF7Q02833 373 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 DDB1Q16531 1140 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 PTPN21Q16825 1174 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 CCDC63Q8NA47 563 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 CCDC110Q8TBZ0 833 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 PCDHA4Q9UN74 947 aa11.41□□□□□ -0.58
PTPRM-205ENST00000577827 TARSL2A2RTX5 802 aaKnown RBP11.4□□□□□ -0.58
PTPRM-205ENST00000577827 IGKV5-2P06315 115 aa11.4□□□□□ -0.58
PTPRM-205ENST00000577827 SH3BGRP55822 239 aaPredicted RBP11.4□□□□□ -0.58
PTPRM-205ENST00000577827 MUM1L1Q5H9M0 696 aa11.4□□□□□ -0.58
PTPRM-205ENST00000577827 FAM47AQ5JRC9 791 aa11.4□□□□□ -0.58
PTPRM-205ENST00000577827 LIN9Q5TKA1 542 aa11.4□□□□□ -0.58
PTPRM-205ENST00000577827 RBM43Q6ZSC3 357 aaKnown RBP11.4□□□□□ -0.58
PTPRM-205ENST00000577827 MB21D2Q8IYB1 491 aaPredicted RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms