RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 RNF208Q9H0X6 261 aa22.61■■□□□ 1.21
SS18-208ENST00000577751 SMCHD1A6NHR9 2005 aa22.6■■□□□ 1.21
SS18-208ENST00000577751 PLXNA1Q9UIW2 1896 aa22.6■■□□□ 1.21
SS18-208ENST00000577751 EPB41L2O43491 1005 aaKnown RBP22.6■■□□□ 1.21
SS18-208ENST00000577751 REC8O95072 547 aa22.6■■□□□ 1.21
SS18-208ENST00000577751 GJB1P08034 283 aa22.6■■□□□ 1.21
SS18-208ENST00000577751 TKFCQ3LXA3 575 aa22.6■■□□□ 1.21
SS18-208ENST00000577751 TMEM67Q5HYA8 995 aa22.6■■□□□ 1.21
SS18-208ENST00000577751 OLFML2BQ68BL8 750 aa22.6■■□□□ 1.21
SS18-208ENST00000577751 CCDC174Q6PII3 467 aa22.6■■□□□ 1.21
SS18-208ENST00000577751 PAK6Q9NQU5 681 aaPredicted RBP22.6■■□□□ 1.21
SS18-208ENST00000577751 SLC5A4Q9NY91 659 aa22.6■■□□□ 1.21
SS18-208ENST00000577751 FBXO40Q9UH90 709 aa22.6■■□□□ 1.21
SS18-208ENST00000577751 DIS3Q9Y2L1 958 aaKnown RBP22.6■■□□□ 1.21
SS18-208ENST00000577751 RPTORQ8N122 1335 aa22.59■■□□□ 1.21
SS18-208ENST00000577751 DNAJC25-GNG10A0A024R161 153 aa22.59■■□□□ 1.21
SS18-208ENST00000577751 PRC1O43663 620 aa22.59■■□□□ 1.21
SS18-208ENST00000577751 ICAM1P05362 532 aa22.59■■□□□ 1.21
SS18-208ENST00000577751 PARP1P09874 1014 aaKnown RBP22.59■■□□□ 1.21
SS18-208ENST00000577751 EN2P19622 333 aaPredicted RBP22.59■■□□□ 1.21
SS18-208ENST00000577751 HSPA4P34932 840 aa22.59■■□□□ 1.21
SS18-208ENST00000577751 SLC4A3P48751 1232 aa22.59■■□□□ 1.21
SS18-208ENST00000577751 CACNB2Q08289 660 aaPredicted RBP22.59■■□□□ 1.21
SS18-208ENST00000577751 TROAPQ12815 778 aa22.59■■□□□ 1.21
SS18-208ENST00000577751 ZNF792Q3KQV3 632 aa22.59■■□□□ 1.21
SS18-208ENST00000577751 TMEM87BQ96K49 555 aa22.59■■□□□ 1.21
SS18-208ENST00000577751 LY9Q9HBG7 655 aa22.59■■□□□ 1.21
SS18-208ENST00000577751 PGK2P07205 417 aa22.58■■□□□ 1.21
SS18-208ENST00000577751 GJA8P48165 433 aa22.58■■□□□ 1.21
SS18-208ENST00000577751 MAML3Q96JK9 1138 aa22.58■■□□□ 1.21
SS18-208ENST00000577751 NEK1Q96PY6 1258 aa22.58■■□□□ 1.21
SS18-208ENST00000577751 UBA5Q9GZZ9 404 aa22.58■■□□□ 1.21
SS18-208ENST00000577751 CPVLQ9H3G5 476 aa22.58■■□□□ 1.21
SS18-208ENST00000577751 HMX1Q9NP08 348 aaPredicted RBP22.58■■□□□ 1.21
SS18-208ENST00000577751 PALM3A6NDB9 673 aaPredicted RBP22.57■■□□□ 1.2
SS18-208ENST00000577751 PRKAR2AP13861 404 aaKnown RBP22.57■■□□□ 1.2
SS18-208ENST00000577751 KRT32Q14532 448 aa22.57■■□□□ 1.2
SS18-208ENST00000577751 ADCK5Q3MIX3 580 aa22.57■■□□□ 1.2
SS18-208ENST00000577751 TMTC2Q8N394 836 aa22.57■■□□□ 1.2
SS18-208ENST00000577751 STAG2Q8N3U4 1231 aa22.57■■□□□ 1.2
SS18-208ENST00000577751 TRERF1Q96PN7 1200 aa22.57■■□□□ 1.2
SS18-208ENST00000577751 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.57■■□□□ 1.2
SS18-208ENST00000577751 ACAD9Q9H845 621 aa22.57■■□□□ 1.2
SS18-208ENST00000577751 GPHNQ9NQX3 736 aaPredicted RBP22.57■■□□□ 1.2
SS18-208ENST00000577751 RNF146Q9NTX7 359 aa22.57■■□□□ 1.2
SS18-208ENST00000577751 MAD2L2Q9UI95 211 aa22.57■■□□□ 1.2
SS18-208ENST00000577751 CCPG1Q9ULG6 757 aa22.57■■□□□ 1.2
SS18-208ENST00000577751 SH2B2O14492 632 aaPredicted RBP22.56■■□□□ 1.2
SS18-208ENST00000577751 SGPL1O95470 568 aa22.56■■□□□ 1.2
SS18-208ENST00000577751 ALAS1P13196 640 aa22.56■■□□□ 1.2
SS18-208ENST00000577751 LIFRP42702 1097 aa22.56■■□□□ 1.2
SS18-208ENST00000577751 GRM4Q14833 912 aa22.56■■□□□ 1.2
SS18-208ENST00000577751 MFSD14CQ5VZR4 134 aa22.56■■□□□ 1.2
SS18-208ENST00000577751 ADGRF4Q8IZF3 695 aa22.56■■□□□ 1.2
SS18-208ENST00000577751 DDX11Q96FC9 970 aa22.56■■□□□ 1.2
SS18-208ENST00000577751 HOMER2Q9NSB8 354 aa22.56■■□□□ 1.2
SS18-208ENST00000577751 PNMA2Q9UL42 364 aa22.56■■□□□ 1.2
SS18-208ENST00000577751 WDR19Q8NEZ3 1342 aa22.56■■□□□ 1.2
SS18-208ENST00000577751 KLRF2D3W0D1 207 aa22.55■■□□□ 1.2
SS18-208ENST00000577751 CAPN2P17655 700 aa22.55■■□□□ 1.2
SS18-208ENST00000577751 CYP2C19P33261 490 aa22.55■■□□□ 1.2
SS18-208ENST00000577751 EXOSC10Q01780 885 aaKnown RBP22.55■■□□□ 1.2
SS18-208ENST00000577751 ANKRD35Q8N283 1001 aa22.55■■□□□ 1.2
SS18-208ENST00000577751 U2AF1L4Q8WU68 220 aaKnown RBP22.55■■□□□ 1.2
SS18-208ENST00000577751 SHISA4Q96DD7 197 aa22.55■■□□□ 1.2
SS18-208ENST00000577751 MAP3K14Q99558 947 aa22.55■■□□□ 1.2
SS18-208ENST00000577751 SNX14Q9Y5W7 946 aa22.55■■□□□ 1.2
SS18-208ENST00000577751 CCND3P30281 292 aaPredicted RBP22.54■■□□□ 1.2
SS18-208ENST00000577751 MUM1L1Q5H9M0 696 aa22.54■■□□□ 1.2
SS18-208ENST00000577751 DHX32Q7L7V1 743 aaKnown RBP22.54■■□□□ 1.2
SS18-208ENST00000577751 CATIPQ7Z7H3 387 aa22.54■■□□□ 1.2
SS18-208ENST00000577751 DEFB118Q96PH6 123 aa22.54■■□□□ 1.2
SS18-208ENST00000577751 USP26Q9BXU7 913 aa22.54■■□□□ 1.2
SS18-208ENST00000577751 CRISPLD2Q9H0B8 497 aa22.54■■□□□ 1.2
SS18-208ENST00000577751 JMJD4Q9H9V9 463 aa22.54■■□□□ 1.2
SS18-208ENST00000577751 A1CFQ9NQ94 594 aaKnown RBP22.54■■□□□ 1.2
SS18-208ENST00000577751 TAL1P17542 331 aaPredicted RBP22.53■■□□□ 1.2
SS18-208ENST00000577751 SGMS1Q86VZ5 419 aa22.53■■□□□ 1.2
SS18-208ENST00000577751 ZNF654Q8IZM8 581 aa22.53■■□□□ 1.2
SS18-208ENST00000577751 MTMR8Q96EF0 704 aa22.53■■□□□ 1.2
SS18-208ENST00000577751 MYH6P13533 1939 aa22.53■■□□□ 1.2
SS18-208ENST00000577751 DDAH1O94760 285 aa22.52■■□□□ 1.2
SS18-208ENST00000577751 HMGB1P09429 215 aaKnown RBP22.52■■□□□ 1.2
SS18-208ENST00000577751 MLLT1Q03111 559 aaPredicted RBP22.52■■□□□ 1.2
SS18-208ENST00000577751 CDC37Q16543 378 aaPredicted RBP22.52■■□□□ 1.2
SS18-208ENST00000577751 MAMDC4Q6UXC1 1216 aa22.52■■□□□ 1.2
SS18-208ENST00000577751 ZNF467Q7Z7K2 595 aaPredicted RBP22.52■■□□□ 1.2
SS18-208ENST00000577751 MSL3Q8N5Y2 521 aaKnown RBP22.52■■□□□ 1.2
SS18-208ENST00000577751 TRPV1Q8NER1 839 aa22.52■■□□□ 1.2
SS18-208ENST00000577751 CLEC4DQ8WXI8 215 aa22.52■■□□□ 1.2
SS18-208ENST00000577751 FGD4Q96M96 766 aa22.52■■□□□ 1.2
SS18-208ENST00000577751 TINF2Q9BSI4 451 aa22.52■■□□□ 1.2
SS18-208ENST00000577751 LRRC2Q9BYS8 371 aa22.52■■□□□ 1.2
SS18-208ENST00000577751 RIOX1Q9H6W3 641 aa22.52■■□□□ 1.2
SS18-208ENST00000577751 PFASO15067 1338 aa22.52■■□□□ 1.2
SS18-208ENST00000577751 CYBAP13498 195 aa22.51■■□□□ 1.19
SS18-208ENST00000577751 SLC35G1Q2M3R5 365 aa22.51■■□□□ 1.19
SS18-208ENST00000577751 FAM133AQ8N9E0 248 aa22.51■■□□□ 1.19
SS18-208ENST00000577751 VAT1LQ9HCJ6 419 aa22.51■■□□□ 1.19
SS18-208ENST00000577751 CYP39A1Q9NYL5 469 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms