RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 SLC39A5Q6ZMH5 540 aa16.22■□□□□ 0.19
CCDC40-216ENST00000576241 RNF180Q86T96 592 aa16.22■□□□□ 0.19
CCDC40-216ENST00000576241 FAM160B2Q86V87 743 aa16.22■□□□□ 0.19
CCDC40-216ENST00000576241 TICAM2Q86XR7 235 aa16.22■□□□□ 0.19
CCDC40-216ENST00000576241 ANKRD35Q8N283 1001 aa16.22■□□□□ 0.19
CCDC40-216ENST00000576241 CHURC1Q8WUH1 139 aa16.22■□□□□ 0.19
CCDC40-216ENST00000576241 PPM1EQ8WY54 764 aa16.22■□□□□ 0.19
CCDC40-216ENST00000576241 PRDM5Q9NQX1 630 aaPredicted RBP16.22■□□□□ 0.19
CCDC40-216ENST00000576241 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.22■□□□□ 0.19
CCDC40-216ENST00000576241 RANBP6O60518 1105 aaKnown RBP16.21■□□□□ 0.19
CCDC40-216ENST00000576241 TAL1P17542 331 aaPredicted RBP16.21■□□□□ 0.19
CCDC40-216ENST00000576241 VPS53Q5VIR6 699 aa16.21■□□□□ 0.19
CCDC40-216ENST00000576241 CHST13Q8NET6 341 aa16.21■□□□□ 0.19
CCDC40-216ENST00000576241 FERMT2Q96AC1 680 aa16.21■□□□□ 0.19
CCDC40-216ENST00000576241 LNPKQ9C0E8 428 aa16.21■□□□□ 0.19
CCDC40-216ENST00000576241 RWDD1Q9H446 243 aaPredicted RBP16.21■□□□□ 0.19
CCDC40-216ENST00000576241 TOMM22Q9NS69 142 aa16.21■□□□□ 0.19
CCDC40-216ENST00000576241 ANAPC4Q9UJX5 808 aa16.21■□□□□ 0.19
CCDC40-216ENST00000576241 PIEZO1Q92508 2521 aa16.2■□□□□ 0.18
CCDC40-216ENST00000576241 DNAJC25-GNG10A0A024R161 153 aa16.2■□□□□ 0.18
CCDC40-216ENST00000576241 TRIM6-TRIM34B2RNG4 842 aa16.2■□□□□ 0.18
CCDC40-216ENST00000576241 ZNF865P0CJ78 1059 aaPredicted RBP16.2■□□□□ 0.18
CCDC40-216ENST00000576241 MCCP23508 829 aa16.2■□□□□ 0.18
CCDC40-216ENST00000576241 ALX1Q15699 326 aa16.2■□□□□ 0.18
CCDC40-216ENST00000576241 MCMDC2Q4G0Z9 681 aa16.2■□□□□ 0.18
CCDC40-216ENST00000576241 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.2■□□□□ 0.18
CCDC40-216ENST00000576241 ZNF467Q7Z7K2 595 aaPredicted RBP16.2■□□□□ 0.18
CCDC40-216ENST00000576241 FAM227BQ96M60 508 aa16.2■□□□□ 0.18
CCDC40-216ENST00000576241 C1QTNF1Q9BXJ1 281 aa16.2■□□□□ 0.18
CCDC40-216ENST00000576241 HOMER2Q9NSB8 354 aa16.2■□□□□ 0.18
CCDC40-216ENST00000576241 THEGQ9P2T0 379 aa16.2■□□□□ 0.18
CCDC40-216ENST00000576241 ZHX1Q9UKY1 873 aaPredicted RBP16.2■□□□□ 0.18
CCDC40-216ENST00000576241 FAM184BQ9ULE4 1060 aa16.2■□□□□ 0.18
CCDC40-216ENST00000576241 ORC4O43929 436 aa16.19■□□□□ 0.18
CCDC40-216ENST00000576241 PGK1P00558 417 aa16.19■□□□□ 0.18
CCDC40-216ENST00000576241 TRIM60Q495X7 471 aa16.19■□□□□ 0.18
CCDC40-216ENST00000576241 MAMDC4Q6UXC1 1216 aa16.19■□□□□ 0.18
CCDC40-216ENST00000576241 STAG1Q8WVM7 1258 aa16.19■□□□□ 0.18
CCDC40-216ENST00000576241 RILPL2Q969X0 211 aa16.19■□□□□ 0.18
CCDC40-216ENST00000576241 CHMP4CQ96CF2 233 aa16.19■□□□□ 0.18
CCDC40-216ENST00000576241 INCENPQ9NQS7 918 aa16.19■□□□□ 0.18
CCDC40-216ENST00000576241 PHF24Q9UPV7 400 aa16.19■□□□□ 0.18
CCDC40-216ENST00000576241 ARIH1Q9Y4X5 557 aaPredicted RBP16.19■□□□□ 0.18
CCDC40-216ENST00000576241 MYH4Q9Y623 1939 aa16.19■□□□□ 0.18
CCDC40-216ENST00000576241 A0A0D9SFI3 127 aa16.18■□□□□ 0.18
CCDC40-216ENST00000576241 NMT2O60551 498 aa16.18■□□□□ 0.18
CCDC40-216ENST00000576241 PLA2G6O60733 806 aa16.18■□□□□ 0.18
CCDC40-216ENST00000576241 MRPS5P82675 430 aaKnown RBP16.18■□□□□ 0.18
CCDC40-216ENST00000576241 SNX17Q15036 470 aa16.18■□□□□ 0.18
CCDC40-216ENST00000576241 RCSD1Q6JBY9 416 aa16.18■□□□□ 0.18
CCDC40-216ENST00000576241 B4GALNT3Q6L9W6 998 aa16.18■□□□□ 0.18
CCDC40-216ENST00000576241 LENG1Q96BZ8 264 aaPredicted RBP16.18■□□□□ 0.18
CCDC40-216ENST00000576241 RNPC3Q96LT9 517 aaKnown RBP16.18■□□□□ 0.18
CCDC40-216ENST00000576241 ACAD9Q9H845 621 aa16.18■□□□□ 0.18
CCDC40-216ENST00000576241 IL17RBQ9NRM6 502 aa16.18■□□□□ 0.18
CCDC40-216ENST00000576241 MTMR7Q9Y216 660 aa16.18■□□□□ 0.18
CCDC40-216ENST00000576241 TCF20Q9UGU0 1960 aaKnown RBP16.17■□□□□ 0.18
CCDC40-216ENST00000576241 SNAI1O95863 264 aaPredicted RBP16.17■□□□□ 0.18
CCDC40-216ENST00000576241 FGAP02671 866 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 DNAJB2P25686 324 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 MFAP1P55081 439 aaKnown RBP16.17■□□□□ 0.18
CCDC40-216ENST00000576241 NMIQ13287 307 aaPredicted RBP16.17■□□□□ 0.18
CCDC40-216ENST00000576241 CCDC96Q2M329 555 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 TKFCQ3LXA3 575 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 RRP12Q5JTH9 1297 aaKnown RBP16.17■□□□□ 0.18
CCDC40-216ENST00000576241 C1orf53Q5VUE5 145 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 KCTD1Q719H9 257 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 SH3RF1Q7Z6J0 888 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 SMC5Q8IY18 1101 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 NECAB3Q96P71 396 aaPredicted RBP16.17■□□□□ 0.18
CCDC40-216ENST00000576241 ZNF576Q9H609 170 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 RNF146Q9NTX7 359 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.17■□□□□ 0.18
CCDC40-216ENST00000576241 HCN4Q9Y3Q4 1203 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 ZMYM6O95789 1325 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 CCDC171Q6TFL3 1326 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 SYNRGQ9UMZ2 1314 aa16.17■□□□□ 0.18
CCDC40-216ENST00000576241 MYO9BQ13459 2157 aa16.16■□□□□ 0.18
CCDC40-216ENST00000576241 A0A1W2PQ45 241 aaPredicted RBP16.16■□□□□ 0.18
CCDC40-216ENST00000576241 A0A1W2PQY0 241 aa16.16■□□□□ 0.18
CCDC40-216ENST00000576241 FGRP09769 529 aa16.16■□□□□ 0.18
CCDC40-216ENST00000576241 HSPD1P10809 573 aaKnown RBP16.16■□□□□ 0.18
CCDC40-216ENST00000576241 ACVR2BQ13705 512 aa16.16■□□□□ 0.18
CCDC40-216ENST00000576241 CCDC174Q6PII3 467 aa16.16■□□□□ 0.18
CCDC40-216ENST00000576241 CHD1LQ86WJ1 897 aa16.16■□□□□ 0.18
CCDC40-216ENST00000576241 IL27Q8NEV9 243 aa16.16■□□□□ 0.18
CCDC40-216ENST00000576241 DCAF4Q8WV16 495 aa16.16■□□□□ 0.18
CCDC40-216ENST00000576241 AGBL1Q96MI9 1066 aa16.16■□□□□ 0.18
CCDC40-216ENST00000576241 TSEN34Q9BSV6 310 aaKnown RBP16.16■□□□□ 0.18
CCDC40-216ENST00000576241 ABHD16BQ9H3Z7 469 aa16.16■□□□□ 0.18
CCDC40-216ENST00000576241 PDLIM7Q9NR12 457 aa16.16■□□□□ 0.18
CCDC40-216ENST00000576241 PLXNA1Q9UIW2 1896 aa16.16■□□□□ 0.18
CCDC40-216ENST00000576241 ZNFX1Q9P2E3 1918 aaKnown RBP16.15■□□□□ 0.18
CCDC40-216ENST00000576241 TRIM43BA6NCK2 446 aa16.15■□□□□ 0.18
CCDC40-216ENST00000576241 ADAMTS4O75173 837 aa16.15■□□□□ 0.18
CCDC40-216ENST00000576241 DUSP11O75319 330 aaKnown RBP16.15■□□□□ 0.18
CCDC40-216ENST00000576241 PCP11498 1178 aaKnown RBP16.15■□□□□ 0.18
CCDC40-216ENST00000576241 ALAS1P13196 640 aa16.15■□□□□ 0.18
CCDC40-216ENST00000576241 EPHB4P54760 987 aa16.15■□□□□ 0.18
CCDC40-216ENST00000576241 TLE2Q04725 743 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms