RNA–Protein interactions for RNA: ENST00000569394.5

GTF3C1-210, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-210ENST00000569394 IRF5Q13568 498 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 KCTD2Q14681 263 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 PPP4R3BQ5MIZ7 849 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 SYDE2Q5VT97 1194 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 CREB3L3Q68CJ9 461 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 RIOX2Q8IUF8 465 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 REPS2Q8NFH8 660 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 NUP133Q8WUM0 1156 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 DCAF4Q8WV16 495 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 SOCS4Q8WXH5 440 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 GMCL1Q96IK5 515 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 TCEANC2Q96MN5 208 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 MYL10Q9BUA6 226 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 MROH8Q9H579 483 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 CNNM2Q9H8M5 875 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 ZNF214Q9UL59 606 aaPredicted RBP10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 ADAMTS5Q9UNA0 930 aa10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 DDX49Q9Y6V7 483 aaKnown RBP10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 TNRC18O15417 2968 aaPredicted RBP10.58□□□□□ -0.72
GTF3C1-210ENST00000569394 ERICH2A1L162 156 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 SLC25A27O95847 323 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 CACNB2Q08289 660 aaPredicted RBP10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 GRB14Q14449 540 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 USH1GQ495M9 461 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 TMEM67Q5HYA8 995 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 PRPF38BQ5VTL8 546 aaKnown RBP10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 FAM160B2Q86V87 743 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 ANKRD35Q8N283 1001 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 PXYLP1Q8TE99 480 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 USP6NLQ92738 828 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 DDX11Q96FC9 970 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 TTC14Q96N46 770 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 PURBQ96QR8 312 aaKnown RBP10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 APBA2Q99767 749 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 TEX13BQ9BXU2 312 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 SLC38A10Q9HBR0 1119 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 HMX1Q9NP08 348 aaPredicted RBP10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 CCPG1Q9ULG6 757 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 SMCHD1A6NHR9 2005 aa10.57□□□□□ -0.72
GTF3C1-210ENST00000569394 PRC1O43663 620 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 PARP1P09874 1014 aaKnown RBP10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 CPA1P15085 419 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 RXRAP19793 462 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 ZNF543Q08ER8 600 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 WTAPQ15007 396 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 MUM1L1Q5H9M0 696 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 MFSD14CQ5VZR4 134 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 NSMFQ6X4W1 530 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 NFXL1Q6ZNB6 911 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 DGKHQ86XP1 1220 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 CCDC144CPQ8IYA2 1237 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 STAG2Q8N3U4 1231 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 SHCBP1Q8NEM2 672 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 U2AF1L4Q8WU68 220 aaKnown RBP10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 TRERF1Q96PN7 1200 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 RNF146Q9NTX7 359 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 NAP1L2Q9ULW6 460 aaPredicted RBP10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 HTTP42858 3142 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 ZNF536O15090 1300 aa10.56□□□□□ -0.72
GTF3C1-210ENST00000569394 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 STRNO43815 780 aa10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 NOVP48745 357 aa10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 ANTXR2P58335 489 aa10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 NECTIN1Q15223 517 aa10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 CCDC178Q5BJE1 867 aa10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 HOMER1Q86YM7 354 aa10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 MB21D2Q8IYB1 491 aaPredicted RBP10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 SHISA4Q96DD7 197 aa10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 ZFP91Q96JP5 570 aaPredicted RBP10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 KIAA0100Q14667 2235 aaKnown RBP10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 PLXNA1Q9UIW2 1896 aa10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 RPTORQ8N122 1335 aa10.55□□□□□ -0.72
GTF3C1-210ENST00000569394 PTPDC1A2A3K4 754 aa10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 SGPL1O95470 568 aa10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 GJB1P08034 283 aa10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 PYGBP11216 843 aa10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 XRCC5P13010 732 aaKnown RBP10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 CALML3P27482 149 aa10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 CNTN2Q02246 1040 aa10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 SART3Q15020 963 aaKnown RBP10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 SEC23AQ15436 765 aa10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 ADCK5Q3MIX3 580 aa10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 ADGRF4Q8IZF3 695 aa10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 CMTR1Q8N1G2 835 aaKnown RBP10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 TRPV1Q8NER1 839 aa10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 DIS3LQ8TF46 1054 aaKnown RBP10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 MAML3Q96JK9 1138 aa10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 SYNPO2Q9UMS6 1093 aa10.54□□□□□ -0.72
GTF3C1-210ENST00000569394 BRCA2P51587 3418 aa10.53□□□□□ -0.72
GTF3C1-210ENST00000569394 CCDC69A6NI79 296 aa10.53□□□□□ -0.72
GTF3C1-210ENST00000569394 NFIBO00712 420 aa10.53□□□□□ -0.72
GTF3C1-210ENST00000569394 MCM5P33992 734 aa10.53□□□□□ -0.72
GTF3C1-210ENST00000569394 GJA8P48165 433 aa10.53□□□□□ -0.72
GTF3C1-210ENST00000569394 CDC37Q16543 378 aaPredicted RBP10.53□□□□□ -0.72
GTF3C1-210ENST00000569394 RNF20Q5VTR2 975 aa10.53□□□□□ -0.72
GTF3C1-210ENST00000569394 ERICH6BQ5W0A0 696 aa10.53□□□□□ -0.72
GTF3C1-210ENST00000569394 EEPD1Q7L9B9 569 aa10.53□□□□□ -0.72
GTF3C1-210ENST00000569394 CCDC82Q8N4S0 544 aa10.53□□□□□ -0.72
GTF3C1-210ENST00000569394 ANKS1AQ92625 1134 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms