RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 PAK6Q9NQU5 681 aaPredicted RBP11.49□□□□□ -0.57
CLN6-209ENST00000569336 FRMPD2Q68DX3 1309 aaPredicted RBP11.49□□□□□ -0.57
CLN6-209ENST00000569336 DOCK5Q9H7D0 1870 aa11.49□□□□□ -0.57
CLN6-209ENST00000569336 IFIT3O14879 490 aaKnown RBP11.48□□□□□ -0.57
CLN6-209ENST00000569336 REC8O95072 547 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 ICAM1P05362 532 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 PARP1P09874 1014 aaKnown RBP11.48□□□□□ -0.57
CLN6-209ENST00000569336 MCM5P33992 734 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 GJA8P48165 433 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 WTAPQ15007 396 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 MAP3K21Q5TCX8 1036 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 CREB3L3Q68CJ9 461 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 CYB5R4Q7L1T6 521 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 CHMP4CQ96CF2 233 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 DDX11Q96FC9 970 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 RANBP17Q9H2T7 1088 aaKnown RBP11.48□□□□□ -0.57
CLN6-209ENST00000569336 RAVER2Q9HCJ3 691 aaKnown RBP11.48□□□□□ -0.57
CLN6-209ENST00000569336 GPCPD1Q9NPB8 672 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 DIS3Q9Y2L1 958 aaKnown RBP11.48□□□□□ -0.57
CLN6-209ENST00000569336 PFASO15067 1338 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 KAT6AQ92794 2004 aa11.48□□□□□ -0.57
CLN6-209ENST00000569336 WDR81Q562E7 1941 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 WDR19Q8NEZ3 1342 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 SLC27A2O14975 620 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 MSCO60682 206 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 SLC4A3P48751 1232 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 KRT32Q14532 448 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 NECTIN1Q15223 517 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 SEC23AQ15436 765 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 CCL14Q16627 93 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 CCDC174Q6PII3 467 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 STOX1Q6ZVD7 989 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 MB21D2Q8IYB1 491 aaPredicted RBP11.47□□□□□ -0.57
CLN6-209ENST00000569336 ANKRD35Q8N283 1001 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 U2AF1L4Q8WU68 220 aaKnown RBP11.47□□□□□ -0.57
CLN6-209ENST00000569336 MAML3Q96JK9 1138 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 DEFB118Q96PH6 123 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 HOMER2Q9NSB8 354 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 RNF146Q9NTX7 359 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 CCPG1Q9ULG6 757 aa11.47□□□□□ -0.57
CLN6-209ENST00000569336 COLQQ9Y215 455 aaPredicted RBP11.47□□□□□ -0.57
CLN6-209ENST00000569336 ZNF536O15090 1300 aa11.46□□□□□ -0.57
CLN6-209ENST00000569336 DHX16O60231 1041 aaKnown RBP11.46□□□□□ -0.57
CLN6-209ENST00000569336 SGPL1O95470 568 aa11.46□□□□□ -0.57
CLN6-209ENST00000569336 ALAS1P13196 640 aa11.46□□□□□ -0.57
CLN6-209ENST00000569336 EN2P19622 333 aaPredicted RBP11.46□□□□□ -0.57
CLN6-209ENST00000569336 SLC16A2P36021 539 aa11.46□□□□□ -0.57
CLN6-209ENST00000569336 CACNB2Q08289 660 aaPredicted RBP11.46□□□□□ -0.57
CLN6-209ENST00000569336 TMEM67Q5HYA8 995 aa11.46□□□□□ -0.57
CLN6-209ENST00000569336 CATIPQ7Z7H3 387 aa11.46□□□□□ -0.57
CLN6-209ENST00000569336 MSL3Q8N5Y2 521 aaKnown RBP11.46□□□□□ -0.57
CLN6-209ENST00000569336 ANKLE1Q8NAG6 615 aa11.46□□□□□ -0.57
CLN6-209ENST00000569336 NPLOC4Q8TAT6 608 aa11.46□□□□□ -0.57
CLN6-209ENST00000569336 TMEM87BQ96K49 555 aa11.46□□□□□ -0.57
CLN6-209ENST00000569336 NRBP1Q9UHY1 535 aa11.46□□□□□ -0.57
CLN6-209ENST00000569336 RIPK3Q9Y572 518 aa11.46□□□□□ -0.57
CLN6-209ENST00000569336 TAF6LQ9Y6J9 622 aa11.46□□□□□ -0.57
CLN6-209ENST00000569336 SYNGAP1Q96PV0 1343 aa11.45□□□□□ -0.58
CLN6-209ENST00000569336 EPB41L2O43491 1005 aaKnown RBP11.45□□□□□ -0.58
CLN6-209ENST00000569336 PRC1O43663 620 aa11.45□□□□□ -0.58
CLN6-209ENST00000569336 EIF5BO60841 1220 aaKnown RBP11.45□□□□□ -0.58
CLN6-209ENST00000569336 COBLO75128 1261 aa11.45□□□□□ -0.58
CLN6-209ENST00000569336 HMGB1P09429 215 aaKnown RBP11.45□□□□□ -0.58
CLN6-209ENST00000569336 GOLGA8HP0CJ92 632 aa11.45□□□□□ -0.58
CLN6-209ENST00000569336 TRIM32Q13049 653 aa11.45□□□□□ -0.58
CLN6-209ENST00000569336 TTBK2Q6IQ55 1244 aa11.45□□□□□ -0.58
CLN6-209ENST00000569336 ZNF467Q7Z7K2 595 aaPredicted RBP11.45□□□□□ -0.58
CLN6-209ENST00000569336 TMTC2Q8N394 836 aa11.45□□□□□ -0.58
CLN6-209ENST00000569336 SHISA4Q96DD7 197 aa11.45□□□□□ -0.58
CLN6-209ENST00000569336 AGBL1Q96MI9 1066 aa11.45□□□□□ -0.58
CLN6-209ENST00000569336 TRERF1Q96PN7 1200 aa11.45□□□□□ -0.58
CLN6-209ENST00000569336 FLRT1Q9NZU1 646 aa11.45□□□□□ -0.58
CLN6-209ENST00000569336 DNAJC25-GNG10A0A024R161 153 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 DDAH1O94760 285 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 FARP2O94887 1054 aaPredicted RBP11.44□□□□□ -0.58
CLN6-209ENST00000569336 TFRCP02786 760 aaKnown RBP11.44□□□□□ -0.58
CLN6-209ENST00000569336 PGK2P07205 417 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 CALM1P0DP23 149 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 CALM2P0DP24 149 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 CALM3P0DP25 149 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 CYBAP13498 195 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 KIF5BP33176 963 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 CYP2C19P33261 490 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 TRAF1Q13077 416 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 ZNF792Q3KQV3 632 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 CTCFLQ8NI51 663 aaPredicted RBP11.44□□□□□ -0.58
CLN6-209ENST00000569336 MAP3K14Q99558 947 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 TINF2Q9BSI4 451 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 MAF1Q9H063 256 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 CRISPLD2Q9H0B8 497 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 A1CFQ9NQ94 594 aaKnown RBP11.44□□□□□ -0.58
CLN6-209ENST00000569336 CNPY2Q9Y2B0 182 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 LTBP2Q14767 1821 aa11.44□□□□□ -0.58
CLN6-209ENST00000569336 MYH9P35579 1960 aaKnown RBP11.43□□□□□ -0.58
CLN6-209ENST00000569336 ABCB11O95342 1321 aa11.43□□□□□ -0.58
CLN6-209ENST00000569336 CCDC69A6NI79 296 aa11.43□□□□□ -0.58
CLN6-209ENST00000569336 KLRF2D3W0D1 207 aa11.43□□□□□ -0.58
CLN6-209ENST00000569336 POTEB2H3BUK9 544 aa11.43□□□□□ -0.58
CLN6-209ENST00000569336 IGHA2P01877 340 aa11.43□□□□□ -0.58
CLN6-209ENST00000569336 CNGA1P29973 690 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms