RNA–Protein interactions for RNA: ENST00000564676.5

CDH1-206, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-206ENST00000564676 GJB1P08034 283 aa11.64□□□□□ -0.55
CDH1-206ENST00000564676 HOXC6P09630 235 aa11.64□□□□□ -0.55
CDH1-206ENST00000564676 ZNF543Q08ER8 600 aa11.64□□□□□ -0.55
CDH1-206ENST00000564676 SART3Q15020 963 aaKnown RBP11.64□□□□□ -0.55
CDH1-206ENST00000564676 GPATCH4Q5T3I0 446 aaKnown RBP11.64□□□□□ -0.55
CDH1-206ENST00000564676 SYDE2Q5VT97 1194 aa11.64□□□□□ -0.55
CDH1-206ENST00000564676 RNF20Q5VTR2 975 aa11.64□□□□□ -0.55
CDH1-206ENST00000564676 MFSD14CQ5VZR4 134 aa11.64□□□□□ -0.55
CDH1-206ENST00000564676 BTNL9Q6UXG8 535 aa11.64□□□□□ -0.55
CDH1-206ENST00000564676 CHST3Q7LGC8 479 aa11.64□□□□□ -0.55
CDH1-206ENST00000564676 HMX1Q9NP08 348 aaPredicted RBP11.64□□□□□ -0.55
CDH1-206ENST00000564676 RIPK3Q9Y572 518 aa11.64□□□□□ -0.55
CDH1-206ENST00000564676 RPTORQ8N122 1335 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 PARP1P09874 1014 aaKnown RBP11.63□□□□□ -0.55
CDH1-206ENST00000564676 GOLGA8HP0CJ92 632 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 SNHG28P0DPA3 235 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 WTAPQ15007 396 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 NECTIN1Q15223 517 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 SEC23AQ15436 765 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 TMEM67Q5HYA8 995 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 CHST13Q8NET6 341 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 DDX11Q96FC9 970 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 AGBL1Q96MI9 1066 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 DEFB118Q96PH6 123 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.63□□□□□ -0.55
CDH1-206ENST00000564676 HOMER2Q9NSB8 354 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 FLRT1Q9NZU1 646 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 FBXO40Q9UH90 709 aa11.63□□□□□ -0.55
CDH1-206ENST00000564676 HTTP42858 3142 aa11.62□□□□□ -0.55
CDH1-206ENST00000564676 TFRCP02786 760 aaKnown RBP11.62□□□□□ -0.55
CDH1-206ENST00000564676 PGK2P07205 417 aa11.62□□□□□ -0.55
CDH1-206ENST00000564676 ALAS1P13196 640 aa11.62□□□□□ -0.55
CDH1-206ENST00000564676 GJA8P48165 433 aa11.62□□□□□ -0.55
CDH1-206ENST00000564676 CACNB2Q08289 660 aaPredicted RBP11.62□□□□□ -0.55
CDH1-206ENST00000564676 TKFCQ3LXA3 575 aa11.62□□□□□ -0.55
CDH1-206ENST00000564676 ASPRV1Q53RT3 343 aa11.62□□□□□ -0.55
CDH1-206ENST00000564676 MB21D2Q8IYB1 491 aaPredicted RBP11.62□□□□□ -0.55
CDH1-206ENST00000564676 ANKRD35Q8N283 1001 aa11.62□□□□□ -0.55
CDH1-206ENST00000564676 U2AF1L4Q8WU68 220 aaKnown RBP11.62□□□□□ -0.55
CDH1-206ENST00000564676 UBA5Q9GZZ9 404 aa11.62□□□□□ -0.55
CDH1-206ENST00000564676 RANBP17Q9H2T7 1088 aaKnown RBP11.62□□□□□ -0.55
CDH1-206ENST00000564676 ACAD9Q9H845 621 aa11.62□□□□□ -0.55
CDH1-206ENST00000564676 RNF146Q9NTX7 359 aa11.62□□□□□ -0.55
CDH1-206ENST00000564676 CCPG1Q9ULG6 757 aa11.62□□□□□ -0.55
CDH1-206ENST00000564676 ZNF536O15090 1300 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 PRC1O43663 620 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 DHX16O60231 1041 aaKnown RBP11.61□□□□□ -0.55
CDH1-206ENST00000564676 REC8O95072 547 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 SGPL1O95470 568 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 ICAM1P05362 532 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 CYP2C19P33261 490 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 MCM5P33992 734 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 ANTXR2P58335 489 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 MAP3K21Q5TCX8 1036 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 OLFML2BQ68BL8 750 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 TRERF1Q96PN7 1200 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 CPVLQ9H3G5 476 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 VAT1LQ9HCJ6 419 aa11.61□□□□□ -0.55
CDH1-206ENST00000564676 PAK6Q9NQU5 681 aaPredicted RBP11.61□□□□□ -0.55
CDH1-206ENST00000564676 CNGA1P29973 690 aa11.6□□□□□ -0.55
CDH1-206ENST00000564676 CCND3P30281 292 aaPredicted RBP11.6□□□□□ -0.55
CDH1-206ENST00000564676 ZNF792Q3KQV3 632 aa11.6□□□□□ -0.55
CDH1-206ENST00000564676 NFXL1Q6ZNB6 911 aa11.6□□□□□ -0.55
CDH1-206ENST00000564676 CATIPQ7Z7H3 387 aa11.6□□□□□ -0.55
CDH1-206ENST00000564676 IGDCC4Q8TDY8 1250 aa11.6□□□□□ -0.55
CDH1-206ENST00000564676 MAML3Q96JK9 1138 aa11.6□□□□□ -0.55
CDH1-206ENST00000564676 TMEM87BQ96K49 555 aa11.6□□□□□ -0.55
CDH1-206ENST00000564676 NEK1Q96PY6 1258 aa11.6□□□□□ -0.55
CDH1-206ENST00000564676 MTA3Q9BTC8 594 aa11.6□□□□□ -0.55
CDH1-206ENST00000564676 SENP2Q9HC62 589 aa11.6□□□□□ -0.55
CDH1-206ENST00000564676 PNMA2Q9UL42 364 aa11.6□□□□□ -0.55
CDH1-206ENST00000564676 DIS3Q9Y2L1 958 aaKnown RBP11.6□□□□□ -0.55
CDH1-206ENST00000564676 CENPFP49454 3210 aa11.6□□□□□ -0.55
CDH1-206ENST00000564676 RBBP6Q7Z6E9 1792 aaKnown RBP11.59□□□□□ -0.55
CDH1-206ENST00000564676 SMCHD1A6NHR9 2005 aa11.59□□□□□ -0.55
CDH1-206ENST00000564676 ZNF236Q9UL36 1845 aa11.59□□□□□ -0.55
CDH1-206ENST00000564676 POTEB2H3BUK9 544 aa11.59□□□□□ -0.55
CDH1-206ENST00000564676 TAL1P17542 331 aaPredicted RBP11.59□□□□□ -0.55
CDH1-206ENST00000564676 KRT32Q14532 448 aa11.59□□□□□ -0.55
CDH1-206ENST00000564676 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.59□□□□□ -0.55
CDH1-206ENST00000564676 ADGRF4Q8IZF3 695 aa11.59□□□□□ -0.55
CDH1-206ENST00000564676 TMTC2Q8N394 836 aa11.59□□□□□ -0.55
CDH1-206ENST00000564676 NUP133Q8WUM0 1156 aa11.59□□□□□ -0.55
CDH1-206ENST00000564676 SHISA4Q96DD7 197 aa11.59□□□□□ -0.55
CDH1-206ENST00000564676 LRRC2Q9BYS8 371 aa11.59□□□□□ -0.55
CDH1-206ENST00000564676 DNAJC25-GNG10A0A024R161 153 aa11.58□□□□□ -0.56
CDH1-206ENST00000564676 CCDC69A6NI79 296 aa11.58□□□□□ -0.56
CDH1-206ENST00000564676 KLRF2D3W0D1 207 aa11.58□□□□□ -0.56
CDH1-206ENST00000564676 FARP2O94887 1054 aaPredicted RBP11.58□□□□□ -0.56
CDH1-206ENST00000564676 CAPN2P17655 700 aa11.58□□□□□ -0.56
CDH1-206ENST00000564676 GRM4Q14833 912 aa11.58□□□□□ -0.56
CDH1-206ENST00000564676 CDC37Q16543 378 aaPredicted RBP11.58□□□□□ -0.56
CDH1-206ENST00000564676 TSGA10IPQ3SY00 556 aa11.58□□□□□ -0.56
CDH1-206ENST00000564676 MUM1L1Q5H9M0 696 aa11.58□□□□□ -0.56
CDH1-206ENST00000564676 PRAMEF19Q5SWL8 479 aa11.58□□□□□ -0.56
CDH1-206ENST00000564676 NSMFQ6X4W1 530 aa11.58□□□□□ -0.56
CDH1-206ENST00000564676 RASEFQ8IZ41 740 aa11.58□□□□□ -0.56
CDH1-206ENST00000564676 STAG2Q8N3U4 1231 aa11.58□□□□□ -0.56
CDH1-206ENST00000564676 TINF2Q9BSI4 451 aa11.58□□□□□ -0.56
CDH1-206ENST00000564676 CRISPLD2Q9H0B8 497 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms