RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 ADCYAP1R1P41586 468 aa20.97■□□□□ 0.95
HDDC3-205ENST00000559898 RTP1P59025 263 aa20.97■□□□□ 0.95
HDDC3-205ENST00000559898 IKQ13123 557 aaPredicted RBP20.97■□□□□ 0.95
HDDC3-205ENST00000559898 MUM1L1Q5H9M0 696 aa20.97■□□□□ 0.95
HDDC3-205ENST00000559898 DDX11Q96FC9 970 aa20.97■□□□□ 0.95
HDDC3-205ENST00000559898 LRCH3Q96II8 777 aa20.97■□□□□ 0.95
HDDC3-205ENST00000559898 CTDP1Q9Y5B0 961 aaPredicted RBP20.97■□□□□ 0.95
HDDC3-205ENST00000559898 ASTN1O14525 1302 aa20.97■□□□□ 0.95
HDDC3-205ENST00000559898 ZMYM6O95789 1325 aa20.97■□□□□ 0.95
HDDC3-205ENST00000559898 LRRC37A2A6NM11 1700 aa20.96■□□□□ 0.95
HDDC3-205ENST00000559898 MDM2Q00987 491 aaPredicted RBP20.96■□□□□ 0.95
HDDC3-205ENST00000559898 AKNAD1Q5T1N1 836 aa20.96■□□□□ 0.95
HDDC3-205ENST00000559898 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.96■□□□□ 0.95
HDDC3-205ENST00000559898 GPCPD1Q9NPB8 672 aa20.96■□□□□ 0.95
HDDC3-205ENST00000559898 LAMA3Q16787 3333 aa20.96■□□□□ 0.95
HDDC3-205ENST00000559898 MYADML2A6NDP7 307 aa20.95■□□□□ 0.94
HDDC3-205ENST00000559898 CCDC96Q2M329 555 aa20.95■□□□□ 0.94
HDDC3-205ENST00000559898 SLC39A5Q6ZMH5 540 aa20.95■□□□□ 0.94
HDDC3-205ENST00000559898 FAM160B2Q86V87 743 aa20.95■□□□□ 0.94
HDDC3-205ENST00000559898 ANKRD35Q8N283 1001 aa20.95■□□□□ 0.94
HDDC3-205ENST00000559898 A1CFQ9NQ94 594 aaKnown RBP20.95■□□□□ 0.94
HDDC3-205ENST00000559898 RNF146Q9NTX7 359 aa20.95■□□□□ 0.94
HDDC3-205ENST00000559898 SOWAHBA6NEL2 793 aa20.94■□□□□ 0.94
HDDC3-205ENST00000559898 ALAS1P13196 640 aa20.94■□□□□ 0.94
HDDC3-205ENST00000559898 OAZ1P54368 228 aa20.94■□□□□ 0.94
HDDC3-205ENST00000559898 MAMDC4Q6UXC1 1216 aa20.94■□□□□ 0.94
HDDC3-205ENST00000559898 ARRDC4Q8NCT1 418 aa20.94■□□□□ 0.94
HDDC3-205ENST00000559898 CHST13Q8NET6 341 aa20.94■□□□□ 0.94
HDDC3-205ENST00000559898 CHURC1Q8WUH1 139 aa20.94■□□□□ 0.94
HDDC3-205ENST00000559898 KATNBL1Q9H079 304 aa20.94■□□□□ 0.94
HDDC3-205ENST00000559898 CPVLQ9H3G5 476 aa20.94■□□□□ 0.94
HDDC3-205ENST00000559898 XPNPEP3Q9NQH7 507 aa20.94■□□□□ 0.94
HDDC3-205ENST00000559898 DIAPH3Q9NSV4 1193 aa20.94■□□□□ 0.94
HDDC3-205ENST00000559898 ZHX1Q9UKY1 873 aaPredicted RBP20.94■□□□□ 0.94
HDDC3-205ENST00000559898 ATP11BQ9Y2G3 1177 aa20.94■□□□□ 0.94
HDDC3-205ENST00000559898 KBTBD13C9JR72 458 aa20.93■□□□□ 0.94
HDDC3-205ENST00000559898 PLA2G6O60733 806 aa20.93■□□□□ 0.94
HDDC3-205ENST00000559898 ADAMTS4O75173 837 aa20.93■□□□□ 0.94
HDDC3-205ENST00000559898 TRIM60Q495X7 471 aa20.93■□□□□ 0.94
HDDC3-205ENST00000559898 MFSD6Q6ZSS7 791 aa20.93■□□□□ 0.94
HDDC3-205ENST00000559898 SH3RF1Q7Z6J0 888 aa20.93■□□□□ 0.94
HDDC3-205ENST00000559898 TICAM2Q86XR7 235 aa20.93■□□□□ 0.94
HDDC3-205ENST00000559898 TRERF1Q96PN7 1200 aa20.93■□□□□ 0.94
HDDC3-205ENST00000559898 TCP11L1Q9NUJ3 509 aa20.93■□□□□ 0.94
HDDC3-205ENST00000559898 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.93■□□□□ 0.94
HDDC3-205ENST00000559898 RARBP10826 455 aa20.92■□□□□ 0.94
HDDC3-205ENST00000559898 TOP1P11387 765 aaKnown RBP20.92■□□□□ 0.94
HDDC3-205ENST00000559898 BMP8BP34820 402 aa20.92■□□□□ 0.94
HDDC3-205ENST00000559898 TMEM63BQ5T3F8 832 aa20.92■□□□□ 0.94
HDDC3-205ENST00000559898 TTC22Q5TAA0 569 aa20.92■□□□□ 0.94
HDDC3-205ENST00000559898 ARMCX2Q7L311 632 aa20.92■□□□□ 0.94
HDDC3-205ENST00000559898 CCDC144CPQ8IYA2 1237 aa20.92■□□□□ 0.94
HDDC3-205ENST00000559898 FAM133AQ8N9E0 248 aa20.92■□□□□ 0.94
HDDC3-205ENST00000559898 DCAF4Q8WV16 495 aa20.92■□□□□ 0.94
HDDC3-205ENST00000559898 ACAD9Q9H845 621 aa20.92■□□□□ 0.94
HDDC3-205ENST00000559898 NRBP1Q9UHY1 535 aa20.92■□□□□ 0.94
HDDC3-205ENST00000559898 SYNGAP1Q96PV0 1343 aa20.92■□□□□ 0.94
HDDC3-205ENST00000559898 SYNRGQ9UMZ2 1314 aa20.92■□□□□ 0.94
HDDC3-205ENST00000559898 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.91■□□□□ 0.94
HDDC3-205ENST00000559898 GOLGA8HP0CJ92 632 aa20.91■□□□□ 0.94
HDDC3-205ENST00000559898 PDHBP11177 359 aa20.91■□□□□ 0.94
HDDC3-205ENST00000559898 AKR1A1P14550 325 aa20.91■□□□□ 0.94
HDDC3-205ENST00000559898 ACVR2BQ13705 512 aa20.91■□□□□ 0.94
HDDC3-205ENST00000559898 RANBP17Q9H2T7 1088 aaKnown RBP20.91■□□□□ 0.94
HDDC3-205ENST00000559898 PHF24Q9UPV7 400 aa20.91■□□□□ 0.94
HDDC3-205ENST00000559898 CNPY2Q9Y2B0 182 aa20.91■□□□□ 0.94
HDDC3-205ENST00000559898 B4E1Z4 1266 aa20.9■□□□□ 0.94
HDDC3-205ENST00000559898 ZNF213O14771 459 aa20.9■□□□□ 0.94
HDDC3-205ENST00000559898 KDM4AO75164 1064 aa20.9■□□□□ 0.94
HDDC3-205ENST00000559898 SNX17Q15036 470 aa20.9■□□□□ 0.94
HDDC3-205ENST00000559898 SYDE2Q5VT97 1194 aa20.9■□□□□ 0.94
HDDC3-205ENST00000559898 BTNL9Q6UXG8 535 aa20.9■□□□□ 0.94
HDDC3-205ENST00000559898 ZNF467Q7Z7K2 595 aaPredicted RBP20.9■□□□□ 0.94
HDDC3-205ENST00000559898 SKAP1Q86WV1 359 aa20.9■□□□□ 0.94
HDDC3-205ENST00000559898 UBE2OQ9C0C9 1292 aaKnown RBP20.9■□□□□ 0.94
HDDC3-205ENST00000559898 FBXO40Q9UH90 709 aa20.9■□□□□ 0.94
HDDC3-205ENST00000559898 CCPG1Q9ULG6 757 aa20.9■□□□□ 0.94
HDDC3-205ENST00000559898 A0A1W2PQ45 241 aaPredicted RBP20.89■□□□□ 0.93
HDDC3-205ENST00000559898 A0A1W2PQY0 241 aa20.89■□□□□ 0.93
HDDC3-205ENST00000559898 TRIM43BA6NCK2 446 aa20.89■□□□□ 0.93
HDDC3-205ENST00000559898 POTEB2H3BUK9 544 aa20.89■□□□□ 0.93
HDDC3-205ENST00000559898 CCDC144BQ3MJ40 725 aa20.89■□□□□ 0.93
HDDC3-205ENST00000559898 PPP4R3BQ5MIZ7 849 aa20.89■□□□□ 0.93
HDDC3-205ENST00000559898 CCSAPQ6IQ19 270 aaPredicted RBP20.89■□□□□ 0.93
HDDC3-205ENST00000559898 TRIM43Q96BQ3 446 aaPredicted RBP20.89■□□□□ 0.93
HDDC3-205ENST00000559898 TAF6LQ9Y6J9 622 aa20.89■□□□□ 0.93
HDDC3-205ENST00000559898 NFIBO00712 420 aa20.88■□□□□ 0.93
HDDC3-205ENST00000559898 SNHG28P0DPA3 235 aa20.88■□□□□ 0.93
HDDC3-205ENST00000559898 FDX1P10109 184 aa20.88■□□□□ 0.93
HDDC3-205ENST00000559898 ITGB8P26012 769 aa20.88■□□□□ 0.93
HDDC3-205ENST00000559898 PTH1RQ03431 593 aa20.88■□□□□ 0.93
HDDC3-205ENST00000559898 ZNF543Q08ER8 600 aa20.88■□□□□ 0.93
HDDC3-205ENST00000559898 NSMFQ6X4W1 530 aa20.88■□□□□ 0.93
HDDC3-205ENST00000559898 MSL3Q8N5Y2 521 aaKnown RBP20.88■□□□□ 0.93
HDDC3-205ENST00000559898 KLHDC9Q8NEP7 349 aa20.88■□□□□ 0.93
HDDC3-205ENST00000559898 DSCC1Q9BVC3 393 aa20.88■□□□□ 0.93
HDDC3-205ENST00000559898 UBA5Q9GZZ9 404 aa20.88■□□□□ 0.93
HDDC3-205ENST00000559898 PDLIM7Q9NR12 457 aa20.88■□□□□ 0.93
HDDC3-205ENST00000559898 PDGFCQ9NRA1 345 aa20.88■□□□□ 0.93
HDDC3-205ENST00000559898 CYP39A1Q9NYL5 469 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms