RNA–Protein interactions for RNA: ENST00000558400.1

TPM1-213, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-213ENST00000558400 NECTIN1Q15223 517 aa9.93□□□□□ -0.82
TPM1-213ENST00000558400 MAP3K21Q5TCX8 1036 aa9.93□□□□□ -0.82
TPM1-213ENST00000558400 SNRNP48Q6IEG0 339 aaKnown RBP9.93□□□□□ -0.82
TPM1-213ENST00000558400 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.93□□□□□ -0.82
TPM1-213ENST00000558400 MSL3Q8N5Y2 521 aaKnown RBP9.93□□□□□ -0.82
TPM1-213ENST00000558400 ENAHQ8N8S7 591 aaPredicted RBP9.93□□□□□ -0.82
TPM1-213ENST00000558400 PNMA1Q8ND90 353 aa9.93□□□□□ -0.82
TPM1-213ENST00000558400 TRIB2Q92519 343 aa9.93□□□□□ -0.82
TPM1-213ENST00000558400 ZKSCAN3Q9BRR0 538 aa9.93□□□□□ -0.82
TPM1-213ENST00000558400 RAVER2Q9HCJ3 691 aaKnown RBP9.93□□□□□ -0.82
TPM1-213ENST00000558400 PAK6Q9NQU5 681 aaPredicted RBP9.93□□□□□ -0.82
TPM1-213ENST00000558400 PRR12Q9ULL5 1215 aa9.93□□□□□ -0.82
TPM1-213ENST00000558400 MTMR7Q9Y216 660 aa9.93□□□□□ -0.82
TPM1-213ENST00000558400 GREB1LQ9C091 1923 aaPredicted RBP9.93□□□□□ -0.82
TPM1-213ENST00000558400 DOCK3Q8IZD9 2030 aa9.92□□□□□ -0.82
TPM1-213ENST00000558400 TNKSO95271 1327 aa9.92□□□□□ -0.82
TPM1-213ENST00000558400 IFIT3O14879 490 aaKnown RBP9.92□□□□□ -0.82
TPM1-213ENST00000558400 EPB41L2O43491 1005 aaKnown RBP9.92□□□□□ -0.82
TPM1-213ENST00000558400 MSCO60682 206 aa9.92□□□□□ -0.82
TPM1-213ENST00000558400 TFRCP02786 760 aaKnown RBP9.92□□□□□ -0.82
TPM1-213ENST00000558400 ASPRV1Q53RT3 343 aa9.92□□□□□ -0.82
TPM1-213ENST00000558400 SYDE2Q5VT97 1194 aa9.92□□□□□ -0.82
TPM1-213ENST00000558400 ANKRD35Q8N283 1001 aa9.92□□□□□ -0.82
TPM1-213ENST00000558400 U2AF1L4Q8WU68 220 aaKnown RBP9.92□□□□□ -0.82
TPM1-213ENST00000558400 MAF1Q9H063 256 aa9.92□□□□□ -0.82
TPM1-213ENST00000558400 UNC93B1Q9H1C4 597 aa9.92□□□□□ -0.82
TPM1-213ENST00000558400 GPCPD1Q9NPB8 672 aa9.92□□□□□ -0.82
TPM1-213ENST00000558400 NRBP1Q9UHY1 535 aa9.92□□□□□ -0.82
TPM1-213ENST00000558400 C19orf67A6NJJ6 358 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 SLC27A2O14975 620 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 EIF5BO60841 1220 aaKnown RBP9.91□□□□□ -0.82
TPM1-213ENST00000558400 COBLO75128 1261 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 REC8O95072 547 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 ICAM1P05362 532 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 PARP1P09874 1014 aaKnown RBP9.91□□□□□ -0.82
TPM1-213ENST00000558400 MCM5P33992 734 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 SLC4A3P48751 1232 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 CACNB2Q08289 660 aaPredicted RBP9.91□□□□□ -0.82
TPM1-213ENST00000558400 TRAF1Q13077 416 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 KRT32Q14532 448 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 WTAPQ15007 396 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 SEC23AQ15436 765 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 CCL14Q16627 93 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 TSGA10IPQ3SY00 556 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 CREB3L3Q68CJ9 461 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 TTBK2Q6IQ55 1244 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 ANKLE1Q8NAG6 615 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 NPLOC4Q8TAT6 608 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 MAML3Q96JK9 1138 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 TMEM87BQ96K49 555 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 DEFB118Q96PH6 123 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 TRERF1Q96PN7 1200 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.91□□□□□ -0.82
TPM1-213ENST00000558400 RANBP17Q9H2T7 1088 aaKnown RBP9.91□□□□□ -0.82
TPM1-213ENST00000558400 PRO3102Q9H379 93 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 ACAD9Q9H845 621 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 RIPK3Q9Y572 518 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 MGAMO43451 1857 aa9.91□□□□□ -0.82
TPM1-213ENST00000558400 ZNF536O15090 1300 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 IGHA2P01877 340 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 HMGB1P09429 215 aaKnown RBP9.9□□□□□ -0.82
TPM1-213ENST00000558400 ALAS1P13196 640 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 SLC16A2P36021 539 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 ZNF792Q3KQV3 632 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 TMEM67Q5HYA8 995 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 CYB5R4Q7L1T6 521 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 CATIPQ7Z7H3 387 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 ZNF467Q7Z7K2 595 aaPredicted RBP9.9□□□□□ -0.82
TPM1-213ENST00000558400 SKAP1Q86WV1 359 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 IGDCC4Q8TDY8 1250 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 CHMP4CQ96CF2 233 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 AGBL1Q96MI9 1066 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 MAP3K14Q99558 947 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 TINF2Q9BSI4 451 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 CRISPLD2Q9H0B8 497 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 CCPG1Q9ULG6 757 aa9.9□□□□□ -0.82
TPM1-213ENST00000558400 ZSWIM8A7E2V4 1837 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 PFASO15067 1338 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 FRMPD2Q68DX3 1309 aaPredicted RBP9.89□□□□□ -0.83
TPM1-213ENST00000558400 WDR19Q8NEZ3 1342 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 DNAJC25-GNG10A0A024R161 153 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 POTEB2H3BUK9 544 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 CNGA1P29973 690 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 CYP2C19P33261 490 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 LIFRP42702 1097 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 TRIM32Q13049 653 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 CCDC174Q6PII3 467 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 MAMDC4Q6UXC1 1216 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 MB21D2Q8IYB1 491 aaPredicted RBP9.89□□□□□ -0.83
TPM1-213ENST00000558400 RGS22Q8NE09 1264 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 NEK1Q96PY6 1258 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 RNF146Q9NTX7 359 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 FLRT1Q9NZU1 646 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 OGDHLQ9ULD0 1010 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 CNPY2Q9Y2B0 182 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 RLFQ13129 1914 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 MYH4Q9Y623 1939 aa9.89□□□□□ -0.83
TPM1-213ENST00000558400 SYNGAP1Q96PV0 1343 aa9.88□□□□□ -0.83
TPM1-213ENST00000558400 LAMA3Q16787 3333 aa9.88□□□□□ -0.83
TPM1-213ENST00000558400 LOC102724159A0A0B4J2E5 919 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms