RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 PABPC4Q13310 644 aaKnown RBP eCLIP19.41■□□□□ 0.72e-6■■■■■ 31.5
SNX1-203ENST00000558040 COG2Q14746 738 aa19.41■□□□□ 0.7
SNX1-203ENST00000558040 SAMD1Q6SPF0 538 aaPredicted RBP19.41■□□□□ 0.7
SNX1-203ENST00000558040 CATSPERGQ6ZRH7 1159 aa19.41■□□□□ 0.7
SNX1-203ENST00000558040 FBXO11Q86XK2 927 aa19.41■□□□□ 0.7
SNX1-203ENST00000558040 ZNF784Q8NCA9 323 aaPredicted RBP19.41■□□□□ 0.7
SNX1-203ENST00000558040 TNPO1Q92973 898 aaKnown RBP19.41■□□□□ 0.7
SNX1-203ENST00000558040 KCNJ14Q9UNX9 436 aa19.41■□□□□ 0.7
SNX1-203ENST00000558040 ESYT2A0FGR8 921 aa19.4■□□□□ 0.7
SNX1-203ENST00000558040 CETPP11597 493 aa19.4■□□□□ 0.7
SNX1-203ENST00000558040 KRT2P35908 639 aa19.4■□□□□ 0.7
SNX1-203ENST00000558040 GJA5P36382 358 aa19.4■□□□□ 0.7
SNX1-203ENST00000558040 SPRYD7Q5W111 196 aa19.4■□□□□ 0.7
SNX1-203ENST00000558040 BRAPQ7Z569 592 aa19.4■□□□□ 0.7
SNX1-203ENST00000558040 FERMT3Q86UX7 667 aa19.4■□□□□ 0.7
SNX1-203ENST00000558040 AGTPBP1Q9UPW5 1226 aa19.4■□□□□ 0.7
SNX1-203ENST00000558040 ZBED4O75132 1171 aa19.39■□□□□ 0.69
SNX1-203ENST00000558040 GNA11P29992 359 aa19.39■□□□□ 0.69
SNX1-203ENST00000558040 HOXA7P31268 230 aaPredicted RBP19.39■□□□□ 0.69
SNX1-203ENST00000558040 KIF23Q02241 960 aaPredicted RBP19.39■□□□□ 0.69
SNX1-203ENST00000558040 RESTQ13127 1097 aa19.39■□□□□ 0.69
SNX1-203ENST00000558040 SAPCD2Q86UD0 394 aa19.39■□□□□ 0.69
SNX1-203ENST00000558040 DIS3L2Q8IYB7 885 aaKnown RBP19.39■□□□□ 0.69
SNX1-203ENST00000558040 BICD2Q8TD16 824 aa19.39■□□□□ 0.69
SNX1-203ENST00000558040 ZMYND12Q9H0C1 365 aa19.39■□□□□ 0.69
SNX1-203ENST00000558040 FOXP1Q9H334 677 aaPredicted RBP19.39■□□□□ 0.69
SNX1-203ENST00000558040 C6orf50Q9HD87 102 aa19.39■□□□□ 0.69
SNX1-203ENST00000558040 HOXC10Q9NYD6 342 aa19.39■□□□□ 0.69
SNX1-203ENST00000558040 PCDHA1Q9Y5I3 950 aa19.39■□□□□ 0.69
SNX1-203ENST00000558040 TLL2Q9Y6L7 1015 aa19.39■□□□□ 0.69
SNX1-203ENST00000558040 TMEM88BA6NKF7 163 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 PPP1R11O60927 126 aaPredicted RBP19.38■□□□□ 0.69
SNX1-203ENST00000558040 DSG3P32926 999 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 ZNF157P51786 506 aaPredicted RBP19.38■□□□□ 0.69
SNX1-203ENST00000558040 SNAP25P60880 206 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 IRX3P78415 501 aaPredicted RBP19.38■□□□□ 0.69
SNX1-203ENST00000558040 TREML2Q5T2D2 321 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 RGMBQ6NW40 437 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 CCDC174Q6PII3 467 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 DAGLBQ8NCG7 672 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 COA7Q96BR5 231 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 SHISA4Q96DD7 197 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 GBP4Q96PP9 640 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 GLT8D2Q9H1C3 349 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 SLC38A10Q9HBR0 1119 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 PCDHA4Q9UN74 947 aa19.38■□□□□ 0.69
SNX1-203ENST00000558040 SMCO2A6NFE2 343 aa19.37■□□□□ 0.69
SNX1-203ENST00000558040 ICAM1P05362 532 aa19.37■□□□□ 0.69
SNX1-203ENST00000558040 OSBPP22059 807 aa19.37■□□□□ 0.69
SNX1-203ENST00000558040 U2AF2P26368 475 aaKnown RBP eCLIP19.37■□□□□ 0.693e-7■■■■□ 21.1
SNX1-203ENST00000558040 ADCY7P51828 1080 aa19.37■□□□□ 0.69
SNX1-203ENST00000558040 TYW1BQ6NUM6 668 aa19.37■□□□□ 0.69
SNX1-203ENST00000558040 BLIDQ8IZY5 108 aa19.37■□□□□ 0.69
SNX1-203ENST00000558040 ATG4CQ96DT6 458 aa19.37■□□□□ 0.69
SNX1-203ENST00000558040 ABT1Q9ULW3 272 aaKnown RBP19.37■□□□□ 0.69
SNX1-203ENST00000558040 PARP14Q460N5 1801 aa19.37■□□□□ 0.69
SNX1-203ENST00000558040 ABCB11O95342 1321 aa19.36■□□□□ 0.69
SNX1-203ENST00000558040 VWA5AO00534 786 aa19.36■□□□□ 0.69
SNX1-203ENST00000558040 OAZ1P54368 228 aa19.36■□□□□ 0.69
SNX1-203ENST00000558040 MOGSQ13724 837 aa19.36■□□□□ 0.69
SNX1-203ENST00000558040 USH1GQ495M9 461 aa19.36■□□□□ 0.69
SNX1-203ENST00000558040 RASAL3Q86YV0 1011 aa19.36■□□□□ 0.69
SNX1-203ENST00000558040 NOSTRINQ8IVI9 506 aa19.36■□□□□ 0.69
SNX1-203ENST00000558040 TEX2Q8IWB9 1127 aa19.36■□□□□ 0.69
SNX1-203ENST00000558040 HHIPL1Q96JK4 782 aa19.36■□□□□ 0.69
SNX1-203ENST00000558040 PNMA3Q9UL41 463 aa19.36■□□□□ 0.69
SNX1-203ENST00000558040 ADAMTS5Q9UNA0 930 aa19.36■□□□□ 0.69
SNX1-203ENST00000558040 SLC45A1Q9Y2W3 748 aa19.36■□□□□ 0.69
SNX1-203ENST00000558040 CCL15-CCL14A0A0B4J2E2 113 aa19.35■□□□□ 0.69
SNX1-203ENST00000558040 BTBD18B2RXH4 712 aa19.35■□□□□ 0.69
SNX1-203ENST00000558040 MRPL12P52815 198 aaKnown RBP19.35■□□□□ 0.69
SNX1-203ENST00000558040 MKRN3Q13064 507 aaKnown RBP19.35■□□□□ 0.69
SNX1-203ENST00000558040 NPY5RQ15761 445 aa19.35■□□□□ 0.69
SNX1-203ENST00000558040 CCL15Q16663 113 aa19.35■□□□□ 0.69
SNX1-203ENST00000558040 CLEC17AQ6ZS10 378 aa19.35■□□□□ 0.69
SNX1-203ENST00000558040 MB21D1Q8N884 522 aa19.35■□□□□ 0.69
SNX1-203ENST00000558040 CUL5Q93034 780 aa19.35■□□□□ 0.69
SNX1-203ENST00000558040 MS4A4AQ96JQ5 239 aa19.35■□□□□ 0.69
SNX1-203ENST00000558040 RIC8AQ9NPQ8 531 aa19.35■□□□□ 0.69
SNX1-203ENST00000558040 CCPG1Q9ULG6 757 aa19.35■□□□□ 0.69
SNX1-203ENST00000558040 MRPL11Q9Y3B7 192 aaKnown RBP19.35■□□□□ 0.69
SNX1-203ENST00000558040 SPDYE16A6NNV3 312 aaPredicted RBP19.34■□□□□ 0.69
SNX1-203ENST00000558040 KIF28PB7ZC32 967 aa19.34■□□□□ 0.69
SNX1-203ENST00000558040 ATL3Q6DD88 541 aa19.34■□□□□ 0.69
SNX1-203ENST00000558040 GPAT2Q6NUI2 795 aa19.34■□□□□ 0.69
SNX1-203ENST00000558040 OXER1Q8TDS5 423 aa19.34■□□□□ 0.69
SNX1-203ENST00000558040 CCDC102AQ96A19 550 aa19.34■□□□□ 0.69
SNX1-203ENST00000558040 ZNF396Q96N95 335 aaPredicted RBP19.34■□□□□ 0.69
SNX1-203ENST00000558040 ASCC2Q9H1I8 757 aaPredicted RBP19.34■□□□□ 0.69
SNX1-203ENST00000558040 PSTPIP2Q9H939 334 aa19.34■□□□□ 0.69
SNX1-203ENST00000558040 ZNF536O15090 1300 aa19.33■□□□□ 0.69
SNX1-203ENST00000558040 MANSC4A6NHS7 340 aaPredicted RBP19.33■□□□□ 0.68
SNX1-203ENST00000558040 SLC10A3P09131 477 aa19.33■□□□□ 0.68
SNX1-203ENST00000558040 NR5A1Q13285 461 aa19.33■□□□□ 0.68
SNX1-203ENST00000558040 MCTP2Q6DN12 878 aa19.33■□□□□ 0.68
SNX1-203ENST00000558040 LBX2Q6XYB7 198 aa19.33■□□□□ 0.68
SNX1-203ENST00000558040 ANKRD23Q86SG2 305 aa19.33■□□□□ 0.68
SNX1-203ENST00000558040 CPXCR1Q8N123 301 aa19.33■□□□□ 0.68
SNX1-203ENST00000558040 REXO1Q8N1G1 1221 aaKnown RBP19.33■□□□□ 0.68
SNX1-203ENST00000558040 GTF3C2Q8WUA4 911 aaPredicted RBP19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms