RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 MLKLQ8NB16 471 aa13.78□□□□□ -0.2
SHMT2-207ENST00000553837 FAM107BQ9H098 131 aa13.78□□□□□ -0.2
SHMT2-207ENST00000553837 CXorf56Q9H5V9 222 aa13.78□□□□□ -0.2
SHMT2-207ENST00000553837 HOOK1Q9UJC3 728 aaKnown RBP13.78□□□□□ -0.2
SHMT2-207ENST00000553837 CDC23Q9UJX2 597 aa13.78□□□□□ -0.2
SHMT2-207ENST00000553837 FAM205AQ6ZU69 1335 aa13.78□□□□□ -0.2
SHMT2-207ENST00000553837 PLCD1P51178 756 aa13.78□□□□□ -0.2
SHMT2-207ENST00000553837 ATP2C1P98194 919 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-207ENST00000553837 ENOX1Q8TC92 643 aaKnown RBP13.78□□□□□ -0.2
SHMT2-207ENST00000553837 STAMQ92783 540 aa13.78□□□□□ -0.2
SHMT2-207ENST00000553837 GPKOWQ92917 476 aaPredicted RBP eCLIP13.78□□□□□ -0.2
SHMT2-207ENST00000553837 ABCB6Q9NP58 842 aa13.78□□□□□ -0.2
SHMT2-207ENST00000553837 EP400Q96L91 3159 aa13.77□□□□□ -0.2
SHMT2-207ENST00000553837 N4BP1O75113 896 aaKnown RBP13.77□□□□□ -0.21
SHMT2-207ENST00000553837 PPFIA4O75335 1185 aa13.77□□□□□ -0.21
SHMT2-207ENST00000553837 NLRP5P59047 1200 aa13.77□□□□□ -0.21
SHMT2-207ENST00000553837 GPSM2P81274 684 aa13.77□□□□□ -0.21
SHMT2-207ENST00000553837 SPTY2D1Q68D10 685 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-207ENST00000553837 SPECC1LQ69YQ0 1117 aa13.77□□□□□ -0.21
SHMT2-207ENST00000553837 PRR5LQ6MZQ0 368 aa13.77□□□□□ -0.21
SHMT2-207ENST00000553837 RASGRP2Q7LDG7 609 aa13.77□□□□□ -0.21
SHMT2-207ENST00000553837 SMYD4Q8IYR2 804 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-207ENST00000553837 CCDC102AQ96A19 550 aa13.77□□□□□ -0.21
SHMT2-207ENST00000553837 ZSWIM4Q9H7M6 989 aa13.77□□□□□ -0.21
SHMT2-207ENST00000553837 A0A087WUV0 522 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-207ENST00000553837 CCDC175P0C221 793 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 DPYDQ12882 1025 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 CASP8Q14790 479 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 DNAJC21Q5F1R6 531 aaKnown RBP13.76□□□□□ -0.21
SHMT2-207ENST00000553837 MMS22LQ6ZRQ5 1243 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 TC2NQ8N9U0 490 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 TRIML1Q8N9V2 468 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 CNBD1Q8NA66 436 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 WDR66Q8TBY9 1149 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 RASGRP4Q8TDF6 673 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 TGFBRAP1Q8WUH2 860 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 FERMT2Q96AC1 680 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 MTRQ99707 1265 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 SAP30BPQ9UHR5 308 aaKnown RBP13.76□□□□□ -0.21
SHMT2-207ENST00000553837 PUF60Q9UHX1 559 aaKnown RBP13.76□□□□□ -0.21
SHMT2-207ENST00000553837 LEMD3Q9Y2U8 911 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 KIF5CO60282 957 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 MCM7P33993 719 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 E2F4Q16254 413 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 MCTP2Q6DN12 878 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 KANK3Q6NY19 840 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.76□□□□□ -0.21
SHMT2-207ENST00000553837 MAPKAPK5Q8IW41 473 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 PNMA1Q8ND90 353 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 CEP89Q96ST8 783 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 PNKPQ96T60 521 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 KAT14Q9H8E8 782 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 MAD2L2Q9UI95 211 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 XDHP47989 1333 aa13.76□□□□□ -0.21
SHMT2-207ENST00000553837 CYTH3O43739 400 aa13.75□□□□□ -0.21
SHMT2-207ENST00000553837 CUL4BQ13620 913 aa13.75□□□□□ -0.21
SHMT2-207ENST00000553837 KARSQ15046 597 aaKnown RBP13.75□□□□□ -0.21
SHMT2-207ENST00000553837 APTXQ7Z2E3 356 aaKnown RBP13.75□□□□□ -0.21
SHMT2-207ENST00000553837 C4orf32Q8N8J7 132 aa13.75□□□□□ -0.21
SHMT2-207ENST00000553837 ANKS1AQ92625 1134 aa13.75□□□□□ -0.21
SHMT2-207ENST00000553837 ROBO3Q96MS0 1386 aa13.75□□□□□ -0.21
SHMT2-207ENST00000553837 RTFDC1Q9BY42 306 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-207ENST00000553837 COBLO75128 1261 aa13.75□□□□□ -0.21
SHMT2-207ENST00000553837 CALRP27797 417 aaKnown RBP13.75□□□□□ -0.21
SHMT2-207ENST00000553837 ADKP55263 362 aaKnown RBP13.75□□□□□ -0.21
SHMT2-207ENST00000553837 STX17P56962 302 aa13.75□□□□□ -0.21
SHMT2-207ENST00000553837 PPP4CP60510 307 aa13.75□□□□□ -0.21
SHMT2-207ENST00000553837 GRM4Q14833 912 aa13.75□□□□□ -0.21
SHMT2-207ENST00000553837 EP400NLQ6ZTU2 488 aa13.75□□□□□ -0.21
SHMT2-207ENST00000553837 DGKHQ86XP1 1220 aa13.75□□□□□ -0.21
SHMT2-207ENST00000553837 MTMR7Q9Y216 660 aa13.75□□□□□ -0.21
SHMT2-207ENST00000553837 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.74□□□□□ -0.21
SHMT2-207ENST00000553837 PPP1R3GB7ZBB8 358 aa13.74□□□□□ -0.21
SHMT2-207ENST00000553837 M0R2N6 131 aa13.74□□□□□ -0.21
SHMT2-207ENST00000553837 CDC25AP30304 524 aa13.74□□□□□ -0.21
SHMT2-207ENST00000553837 KLHL10Q6JEL2 608 aa13.74□□□□□ -0.21
SHMT2-207ENST00000553837 TADA2BQ86TJ2 420 aa13.74□□□□□ -0.21
SHMT2-207ENST00000553837 BLZF1Q9H2G9 400 aa13.74□□□□□ -0.21
SHMT2-207ENST00000553837 CPVLQ9H3G5 476 aa13.74□□□□□ -0.21
SHMT2-207ENST00000553837 CDK5RAP2Q96SN8 1893 aa13.74□□□□□ -0.21
SHMT2-207ENST00000553837 NAV1Q8NEY1 1877 aa13.74□□□□□ -0.21
SHMT2-207ENST00000553837 TEX33O43247 280 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 BMP15O95972 392 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 RASA1P20936 1047 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 ERCC5P28715 1186 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-207ENST00000553837 KIF5BP33176 963 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 NR1I3Q14994 352 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 PDXDC2PQ6P474 469 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 TMED8Q6PL24 325 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-207ENST00000553837 BLIDQ8IZY5 108 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 DESI2Q9BSY9 194 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 FAM204AQ9H8W3 233 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 VIPAS39Q9H9C1 493 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 MKNK2Q9HBH9 465 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 CD209Q9NNX6 404 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 CTAGE9A4FU28 777 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 GOLGA8HP0CJ92 632 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 GYS1P13807 737 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 KIF4BQ2VIQ3 1234 aa13.73□□□□□ -0.21
SHMT2-207ENST00000553837 WWC2Q6AWC2 1192 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms