RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 UBXN2AP68543 259 aa26.63■■□□□ 1.85
TDP1-206ENST00000553569 CCL14Q16627 93 aa26.63■■□□□ 1.85
TDP1-206ENST00000553569 IFFO2Q5TF58 517 aa26.63■■□□□ 1.85
TDP1-206ENST00000553569 DPP9Q86TI2 863 aa26.63■■□□□ 1.85
TDP1-206ENST00000553569 ZNF654Q8IZM8 581 aa26.63■■□□□ 1.85
TDP1-206ENST00000553569 NUP133Q8WUM0 1156 aa26.63■■□□□ 1.85
TDP1-206ENST00000553569 MYL10Q9BUA6 226 aa26.63■■□□□ 1.85
TDP1-206ENST00000553569 CCPG1Q9ULG6 757 aa26.63■■□□□ 1.85
TDP1-206ENST00000553569 CCDC69A6NI79 296 aa26.62■■□□□ 1.85
TDP1-206ENST00000553569 DHX16O60231 1041 aaKnown RBP26.62■■□□□ 1.85
TDP1-206ENST00000553569 HMGCRP04035 888 aa26.62■■□□□ 1.85
TDP1-206ENST00000553569 ALAS1P13196 640 aa26.62■■□□□ 1.85
TDP1-206ENST00000553569 CPA1P15085 419 aa26.62■■□□□ 1.85
TDP1-206ENST00000553569 KCTD2Q14681 263 aa26.62■■□□□ 1.85
TDP1-206ENST00000553569 GRM4Q14833 912 aa26.62■■□□□ 1.85
TDP1-206ENST00000553569 MTFR1Q15390 333 aa26.62■■□□□ 1.85
TDP1-206ENST00000553569 DHX32Q7L7V1 743 aaKnown RBP26.62■■□□□ 1.85
TDP1-206ENST00000553569 ABRAQ8N0Z2 381 aa26.62■■□□□ 1.85
TDP1-206ENST00000553569 NPLOC4Q8TAT6 608 aa26.62■■□□□ 1.85
TDP1-206ENST00000553569 RNF146Q9NTX7 359 aa26.62■■□□□ 1.85
TDP1-206ENST00000553569 MAD2L2Q9UI95 211 aa26.62■■□□□ 1.85
TDP1-206ENST00000553569 ICAM1P05362 532 aa26.61■■□□□ 1.85
TDP1-206ENST00000553569 TROAPQ12815 778 aa26.61■■□□□ 1.85
TDP1-206ENST00000553569 TRIM32Q13049 653 aa26.61■■□□□ 1.85
TDP1-206ENST00000553569 PLXNA1Q9UIW2 1896 aa26.61■■□□□ 1.85
TDP1-206ENST00000553569 WDR19Q8NEZ3 1342 aa26.61■■□□□ 1.85
TDP1-206ENST00000553569 SMCHD1A6NHR9 2005 aa26.6■■□□□ 1.85
TDP1-206ENST00000553569 COBLO75128 1261 aa26.6■■□□□ 1.85
TDP1-206ENST00000553569 DDAH1O94760 285 aa26.6■■□□□ 1.85
TDP1-206ENST00000553569 PGK2P07205 417 aa26.6■■□□□ 1.85
TDP1-206ENST00000553569 HMGB1P09429 215 aaKnown RBP26.6■■□□□ 1.85
TDP1-206ENST00000553569 EXOSC10Q01780 885 aaKnown RBP26.6■■□□□ 1.85
TDP1-206ENST00000553569 ADGRF4Q8IZF3 695 aa26.6■■□□□ 1.85
TDP1-206ENST00000553569 CHST13Q8NET6 341 aa26.6■■□□□ 1.85
TDP1-206ENST00000553569 ACAD9Q9H845 621 aa26.6■■□□□ 1.85
TDP1-206ENST00000553569 FBXO40Q9UH90 709 aa26.6■■□□□ 1.85
TDP1-206ENST00000553569 MYH6P13533 1939 aa26.6■■□□□ 1.85
TDP1-206ENST00000553569 PALM3A6NDB9 673 aaPredicted RBP26.59■■□□□ 1.85
TDP1-206ENST00000553569 KLRF2D3W0D1 207 aa26.59■■□□□ 1.85
TDP1-206ENST00000553569 HOXC6P09630 235 aa26.59■■□□□ 1.85
TDP1-206ENST00000553569 LIFRP42702 1097 aa26.59■■□□□ 1.85
TDP1-206ENST00000553569 CDC37Q16543 378 aaPredicted RBP26.59■■□□□ 1.85
TDP1-206ENST00000553569 TKFCQ3LXA3 575 aa26.59■■□□□ 1.85
TDP1-206ENST00000553569 BLOC1S2Q6QNY1 142 aa26.59■■□□□ 1.85
TDP1-206ENST00000553569 RAB11FIP4Q86YS3 637 aa26.59■■□□□ 1.85
TDP1-206ENST00000553569 TRMT44Q8IYL2 757 aaKnown RBP26.59■■□□□ 1.85
TDP1-206ENST00000553569 TMTC2Q8N394 836 aa26.59■■□□□ 1.85
TDP1-206ENST00000553569 TRERF1Q96PN7 1200 aa26.59■■□□□ 1.85
TDP1-206ENST00000553569 VAT1LQ9HCJ6 419 aa26.59■■□□□ 1.85
TDP1-206ENST00000553569 SLC5A4Q9NY91 659 aa26.59■■□□□ 1.85
TDP1-206ENST00000553569 FLRT1Q9NZU1 646 aa26.59■■□□□ 1.85
TDP1-206ENST00000553569 CCL5P13501 91 aa26.58■■□□□ 1.85
TDP1-206ENST00000553569 ANKRD35Q8N283 1001 aa26.58■■□□□ 1.85
TDP1-206ENST00000553569 TMEM106CQ9BVX2 250 aa26.58■■□□□ 1.85
TDP1-206ENST00000553569 UNC93B1Q9H1C4 597 aa26.58■■□□□ 1.85
TDP1-206ENST00000553569 GTF3C3Q9Y5Q9 886 aa26.58■■□□□ 1.85
TDP1-206ENST00000553569 SLC12A7Q9Y666 1083 aa26.58■■□□□ 1.85
TDP1-206ENST00000553569 CENPFP49454 3210 aa26.57■■□□□ 1.84
TDP1-206ENST00000553569 RBBP6Q7Z6E9 1792 aaKnown RBP26.57■■□□□ 1.84
TDP1-206ENST00000553569 RXRAP19793 462 aa26.57■■□□□ 1.84
TDP1-206ENST00000553569 CASTP20810 708 aaKnown RBP26.57■■□□□ 1.84
TDP1-206ENST00000553569 PSMA5P28066 241 aa26.57■■□□□ 1.84
TDP1-206ENST00000553569 FGD1P98174 961 aa26.57■■□□□ 1.84
TDP1-206ENST00000553569 MUM1L1Q5H9M0 696 aa26.57■■□□□ 1.84
TDP1-206ENST00000553569 CTCFLQ8NI51 663 aaPredicted RBP26.57■■□□□ 1.84
TDP1-206ENST00000553569 DDX11Q96FC9 970 aa26.57■■□□□ 1.84
TDP1-206ENST00000553569 USH1GQ495M9 461 aa26.56■■□□□ 1.84
TDP1-206ENST00000553569 CCDC144CPQ8IYA2 1237 aa26.56■■□□□ 1.84
TDP1-206ENST00000553569 RNF208Q9H0X6 261 aa26.56■■□□□ 1.84
TDP1-206ENST00000553569 JMJD4Q9H9V9 463 aa26.56■■□□□ 1.84
TDP1-206ENST00000553569 POTEFA5A3E0 1075 aa26.55■■□□□ 1.84
TDP1-206ENST00000553569 PRKAR2AP13861 404 aaKnown RBP26.55■■□□□ 1.84
TDP1-206ENST00000553569 QRICH1Q2TAL8 776 aa26.55■■□□□ 1.84
TDP1-206ENST00000553569 MFSD14CQ5VZR4 134 aa26.55■■□□□ 1.84
TDP1-206ENST00000553569 DHX30Q7L2E3 1194 aaKnown RBP eCLIP26.55■■□□□ 1.84
TDP1-206ENST00000553569 SGMS1Q86VZ5 419 aa26.55■■□□□ 1.84
TDP1-206ENST00000553569 MICU3Q86XE3 530 aa26.55■■□□□ 1.84
TDP1-206ENST00000553569 RPS6KB1P23443 525 aa26.54■■□□□ 1.84
TDP1-206ENST00000553569 KIF5BP33176 963 aa26.54■■□□□ 1.84
TDP1-206ENST00000553569 SYNE3Q6ZMZ3 975 aa26.54■■□□□ 1.84
TDP1-206ENST00000553569 Q6ZUG5 572 aa26.54■■□□□ 1.84
TDP1-206ENST00000553569 MAML3Q96JK9 1138 aa26.54■■□□□ 1.84
TDP1-206ENST00000553569 MAP3K14Q99558 947 aa26.54■■□□□ 1.84
TDP1-206ENST00000553569 A1CFQ9NQ94 594 aaKnown RBP26.54■■□□□ 1.84
TDP1-206ENST00000553569 PNMA2Q9UL42 364 aa26.54■■□□□ 1.84
TDP1-206ENST00000553569 BAZ2BQ9UIF8 2168 aaKnown RBP26.54■■□□□ 1.84
TDP1-206ENST00000553569 EIF5BO60841 1220 aaKnown RBP26.53■■□□□ 1.84
TDP1-206ENST00000553569 SEC24BO95487 1268 aa26.53■■□□□ 1.84
TDP1-206ENST00000553569 CALM1P0DP23 149 aa26.53■■□□□ 1.84
TDP1-206ENST00000553569 CALM2P0DP24 149 aa26.53■■□□□ 1.84
TDP1-206ENST00000553569 CALM3P0DP25 149 aa26.53■■□□□ 1.84
TDP1-206ENST00000553569 CYP2C19P33261 490 aa26.53■■□□□ 1.84
TDP1-206ENST00000553569 CACNB2Q08289 660 aaPredicted RBP26.53■■□□□ 1.84
TDP1-206ENST00000553569 SLC35G1Q2M3R5 365 aa26.53■■□□□ 1.84
TDP1-206ENST00000553569 ZNF792Q3KQV3 632 aa26.53■■□□□ 1.84
TDP1-206ENST00000553569 OLFML2BQ68BL8 750 aa26.53■■□□□ 1.84
TDP1-206ENST00000553569 NSMFQ6X4W1 530 aa26.53■■□□□ 1.84
TDP1-206ENST00000553569 HOMER1Q86YM7 354 aa26.53■■□□□ 1.84
TDP1-206ENST00000553569 NAP1L2Q9ULW6 460 aaPredicted RBP26.53■■□□□ 1.84
TDP1-206ENST00000553569 KIAA0100Q14667 2235 aaKnown RBP26.53■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms