RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 MB21D2Q8IYB1 491 aaPredicted RBP22.65■■□□□ 1.22
PTCH1-227ENST00000553256 DIS3LQ8TF46 1054 aaKnown RBP22.65■■□□□ 1.22
PTCH1-227ENST00000553256 SMCHD1A6NHR9 2005 aa22.65■■□□□ 1.22
PTCH1-227ENST00000553256 TFRCP02786 760 aaKnown RBP22.64■■□□□ 1.21
PTCH1-227ENST00000553256 TAL1P17542 331 aaPredicted RBP22.64■■□□□ 1.21
PTCH1-227ENST00000553256 CCDC96Q2M329 555 aa22.64■■□□□ 1.21
PTCH1-227ENST00000553256 TKFCQ3LXA3 575 aa22.64■■□□□ 1.21
PTCH1-227ENST00000553256 TINF2Q9BSI4 451 aa22.64■■□□□ 1.21
PTCH1-227ENST00000553256 SENP2Q9HC62 589 aa22.64■■□□□ 1.21
PTCH1-227ENST00000553256 GPCPD1Q9NPB8 672 aa22.64■■□□□ 1.21
PTCH1-227ENST00000553256 FBXO40Q9UH90 709 aa22.64■■□□□ 1.21
PTCH1-227ENST00000553256 MTMR7Q9Y216 660 aa22.64■■□□□ 1.21
PTCH1-227ENST00000553256 ASTN1O14525 1302 aa22.63■■□□□ 1.21
PTCH1-227ENST00000553256 PLXNA1Q9UIW2 1896 aa22.63■■□□□ 1.21
PTCH1-227ENST00000553256 ICAM1P05362 532 aa22.63■■□□□ 1.21
PTCH1-227ENST00000553256 COL6A1P12109 1028 aa22.63■■□□□ 1.21
PTCH1-227ENST00000553256 ZNF467Q7Z7K2 595 aaPredicted RBP22.63■■□□□ 1.21
PTCH1-227ENST00000553256 FAM133AQ8N9E0 248 aa22.63■■□□□ 1.21
PTCH1-227ENST00000553256 A1CFQ9NQ94 594 aaKnown RBP22.63■■□□□ 1.21
PTCH1-227ENST00000553256 SLC5A4Q9NY91 659 aa22.63■■□□□ 1.21
PTCH1-227ENST00000553256 DDX20Q9UHI6 824 aaKnown RBP22.63■■□□□ 1.21
PTCH1-227ENST00000553256 NRBP1Q9UHY1 535 aa22.63■■□□□ 1.21
PTCH1-227ENST00000553256 FRMPD3Q5JV73 1810 aa22.62■■□□□ 1.21
PTCH1-227ENST00000553256 SLC35G1Q2M3R5 365 aa22.62■■□□□ 1.21
PTCH1-227ENST00000553256 MUM1L1Q5H9M0 696 aa22.62■■□□□ 1.21
PTCH1-227ENST00000553256 PRAMEF19Q5SWL8 479 aa22.62■■□□□ 1.21
PTCH1-227ENST00000553256 GPATCH4Q5T3I0 446 aaKnown RBP22.62■■□□□ 1.21
PTCH1-227ENST00000553256 PRPF38BQ5VTL8 546 aaKnown RBP22.62■■□□□ 1.21
PTCH1-227ENST00000553256 MSL3Q8N5Y2 521 aaKnown RBP22.62■■□□□ 1.21
PTCH1-227ENST00000553256 PAWRQ96IZ0 340 aaKnown RBP22.62■■□□□ 1.21
PTCH1-227ENST00000553256 RNF146Q9NTX7 359 aa22.62■■□□□ 1.21
PTCH1-227ENST00000553256 SNAI1O95863 264 aaPredicted RBP22.61■■□□□ 1.21
PTCH1-227ENST00000553256 ZNF865P0CJ78 1059 aaPredicted RBP22.61■■□□□ 1.21
PTCH1-227ENST00000553256 GOLGA8HP0CJ92 632 aa22.61■■□□□ 1.21
PTCH1-227ENST00000553256 ERICH6BQ5W0A0 696 aa22.61■■□□□ 1.21
PTCH1-227ENST00000553256 CCDC174Q6PII3 467 aa22.61■■□□□ 1.21
PTCH1-227ENST00000553256 IGDCC4Q8TDY8 1250 aa22.61■■□□□ 1.21
PTCH1-227ENST00000553256 KATNBL1Q9H079 304 aa22.61■■□□□ 1.21
PTCH1-227ENST00000553256 CPVLQ9H3G5 476 aa22.61■■□□□ 1.21
PTCH1-227ENST00000553256 ACAD9Q9H845 621 aa22.61■■□□□ 1.21
PTCH1-227ENST00000553256 PFASO15067 1338 aa22.6■■□□□ 1.21
PTCH1-227ENST00000553256 WDR19Q8NEZ3 1342 aa22.6■■□□□ 1.21
PTCH1-227ENST00000553256 SLC27A2O14975 620 aa22.6■■□□□ 1.21
PTCH1-227ENST00000553256 SEPT4O43236 478 aa22.6■■□□□ 1.21
PTCH1-227ENST00000553256 IKQ13123 557 aaPredicted RBP22.6■■□□□ 1.21
PTCH1-227ENST00000553256 NCOA7Q8NI08 942 aa22.6■■□□□ 1.21
PTCH1-227ENST00000553256 CLEC4DQ8WXI8 215 aa22.6■■□□□ 1.21
PTCH1-227ENST00000553256 TRERF1Q96PN7 1200 aa22.6■■□□□ 1.21
PTCH1-227ENST00000553256 KAT14Q9H8E8 782 aa22.6■■□□□ 1.21
PTCH1-227ENST00000553256 CEP290O15078 2479 aa22.6■■□□□ 1.21
PTCH1-227ENST00000553256 RANBP2P49792 3224 aaKnown RBP22.59■■□□□ 1.21
PTCH1-227ENST00000553256 SYNGAP1Q96PV0 1343 aa22.59■■□□□ 1.21
PTCH1-227ENST00000553256 LCTP09848 1927 aa22.59■■□□□ 1.21
PTCH1-227ENST00000553256 SOWAHBA6NEL2 793 aa22.59■■□□□ 1.21
PTCH1-227ENST00000553256 CDC45O75419 566 aa22.59■■□□□ 1.21
PTCH1-227ENST00000553256 CNTN2Q02246 1040 aa22.59■■□□□ 1.21
PTCH1-227ENST00000553256 TROAPQ12815 778 aa22.59■■□□□ 1.21
PTCH1-227ENST00000553256 CREB3L3Q68CJ9 461 aa22.59■■□□□ 1.21
PTCH1-227ENST00000553256 UBAC1Q9BSL1 405 aa22.59■■□□□ 1.21
PTCH1-227ENST00000553256 UBA5Q9GZZ9 404 aa22.59■■□□□ 1.21
PTCH1-227ENST00000553256 HOMER2Q9NSB8 354 aa22.59■■□□□ 1.21
PTCH1-227ENST00000553256 ISY1Q9ULR0 285 aaKnown RBP22.59■■□□□ 1.21
PTCH1-227ENST00000553256 CTDP1Q9Y5B0 961 aaPredicted RBP22.59■■□□□ 1.21
PTCH1-227ENST00000553256 PALM3A6NDB9 673 aaPredicted RBP22.58■■□□□ 1.21
PTCH1-227ENST00000553256 MSCO60682 206 aa22.58■■□□□ 1.21
PTCH1-227ENST00000553256 ALAS1P13196 640 aa22.58■■□□□ 1.21
PTCH1-227ENST00000553256 ASPRV1Q53RT3 343 aa22.58■■□□□ 1.21
PTCH1-227ENST00000553256 IFIT1BQ5T764 474 aaKnown RBP22.58■■□□□ 1.21
PTCH1-227ENST00000553256 ANKRD35Q8N283 1001 aa22.58■■□□□ 1.21
PTCH1-227ENST00000553256 STAG2Q8N3U4 1231 aa22.58■■□□□ 1.21
PTCH1-227ENST00000553256 MTMR8Q96EF0 704 aa22.58■■□□□ 1.21
PTCH1-227ENST00000553256 DDX11Q96FC9 970 aa22.58■■□□□ 1.21
PTCH1-227ENST00000553256 CYP39A1Q9NYL5 469 aa22.58■■□□□ 1.21
PTCH1-227ENST00000553256 MAD2L2Q9UI95 211 aa22.58■■□□□ 1.21
PTCH1-227ENST00000553256 CCPG1Q9ULG6 757 aa22.58■■□□□ 1.21
PTCH1-227ENST00000553256 ALPK3Q96L96 1907 aa22.58■■□□□ 1.21
PTCH1-227ENST00000553256 DNAH12Q6ZR08 3092 aa22.58■■□□□ 1.2
PTCH1-227ENST00000553256 SLC4A3P48751 1232 aa22.57■■□□□ 1.2
PTCH1-227ENST00000553256 TRDNQ13061 729 aa22.57■■□□□ 1.2
PTCH1-227ENST00000553256 KIAA1211Q6ZU35 1233 aa22.57■■□□□ 1.2
PTCH1-227ENST00000553256 CHST3Q7LGC8 479 aa22.57■■□□□ 1.2
PTCH1-227ENST00000553256 MTA3Q9BTC8 594 aa22.57■■□□□ 1.2
PTCH1-227ENST00000553256 ANO2Q9NQ90 1003 aa22.57■■□□□ 1.2
PTCH1-227ENST00000553256 NFIBO00712 420 aa22.56■■□□□ 1.2
PTCH1-227ENST00000553256 TSGA10IPQ3SY00 556 aa22.56■■□□□ 1.2
PTCH1-227ENST00000553256 NECAB2Q7Z6G3 386 aa22.56■■□□□ 1.2
PTCH1-227ENST00000553256 ADGRF4Q8IZF3 695 aa22.56■■□□□ 1.2
PTCH1-227ENST00000553256 MORC4Q8TE76 937 aa22.56■■□□□ 1.2
PTCH1-227ENST00000553256 KCNB2Q92953 911 aa22.56■■□□□ 1.2
PTCH1-227ENST00000553256 JMJD4Q9H9V9 463 aa22.56■■□□□ 1.2
PTCH1-227ENST00000553256 GPHNQ9NQX3 736 aaPredicted RBP22.56■■□□□ 1.2
PTCH1-227ENST00000553256 PPP4R2Q9NY27 417 aa22.56■■□□□ 1.2
PTCH1-227ENST00000553256 NEFLP07196 543 aa22.55■■□□□ 1.2
PTCH1-227ENST00000553256 GRM4Q14833 912 aa22.55■■□□□ 1.2
PTCH1-227ENST00000553256 RASEFQ8IZ41 740 aa22.55■■□□□ 1.2
PTCH1-227ENST00000553256 PURBQ96QR8 312 aaKnown RBP22.55■■□□□ 1.2
PTCH1-227ENST00000553256 LY9Q9HBG7 655 aa22.55■■□□□ 1.2
PTCH1-227ENST00000553256 IFIT3O14879 490 aaKnown RBP22.54■■□□□ 1.2
PTCH1-227ENST00000553256 ADCY6O43306 1168 aa22.54■■□□□ 1.2
PTCH1-227ENST00000553256 PARP1P09874 1014 aaKnown RBP22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms