RNA–Protein interactions for RNA: ENST00000549131.1

LINC00661-203, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-203ENST00000549131 RNF146Q9NTX7 359 aa17.29■□□□□ 0.36
LINC00661-203ENST00000549131 CNPY2Q9Y2B0 182 aa17.29■□□□□ 0.36
LINC00661-203ENST00000549131 ZNF536O15090 1300 aa17.28■□□□□ 0.36
LINC00661-203ENST00000549131 B4E1Z4 1266 aa17.28■□□□□ 0.36
LINC00661-203ENST00000549131 KBTBD13C9JR72 458 aa17.28■□□□□ 0.36
LINC00661-203ENST00000549131 DNM1LO00429 736 aa17.28■□□□□ 0.36
LINC00661-203ENST00000549131 ALAS1P13196 640 aa17.28■□□□□ 0.36
LINC00661-203ENST00000549131 SLC16A2P36021 539 aa17.28■□□□□ 0.36
LINC00661-203ENST00000549131 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.28■□□□□ 0.36
LINC00661-203ENST00000549131 IQCA1Q86XH1 822 aa17.28■□□□□ 0.36
LINC00661-203ENST00000549131 RUFY2Q8WXA3 655 aa17.28■□□□□ 0.36
LINC00661-203ENST00000549131 GPCPD1Q9NPB8 672 aa17.28■□□□□ 0.36
LINC00661-203ENST00000549131 NRBP1Q9UHY1 535 aa17.28■□□□□ 0.36
LINC00661-203ENST00000549131 DNAJC25-GNG10A0A024R161 153 aa17.27■□□□□ 0.36
LINC00661-203ENST00000549131 PDHBP11177 359 aa17.27■□□□□ 0.36
LINC00661-203ENST00000549131 TAL1P17542 331 aaPredicted RBP17.27■□□□□ 0.36
LINC00661-203ENST00000549131 GJC2Q5T442 439 aaPredicted RBP17.27■□□□□ 0.36
LINC00661-203ENST00000549131 SYDE2Q5VT97 1194 aa17.27■□□□□ 0.36
LINC00661-203ENST00000549131 TTBK2Q6IQ55 1244 aa17.27■□□□□ 0.36
LINC00661-203ENST00000549131 TTC14Q96N46 770 aa17.27■□□□□ 0.36
LINC00661-203ENST00000549131 SENP6Q9GZR1 1112 aaPredicted RBP17.27■□□□□ 0.36
LINC00661-203ENST00000549131 CCPG1Q9ULG6 757 aa17.27■□□□□ 0.36
LINC00661-203ENST00000549131 RANBP2P49792 3224 aaKnown RBP17.26■□□□□ 0.35
LINC00661-203ENST00000549131 SYNGAP1Q96PV0 1343 aa17.26■□□□□ 0.35
LINC00661-203ENST00000549131 SLC34A2O95436 690 aa17.26■□□□□ 0.35
LINC00661-203ENST00000549131 RARBP10826 455 aa17.26■□□□□ 0.35
LINC00661-203ENST00000549131 CHMLP26374 656 aa17.26■□□□□ 0.35
LINC00661-203ENST00000549131 NT5C2P49902 561 aa17.26■□□□□ 0.35
LINC00661-203ENST00000549131 LRRC26Q2I0M4 334 aa17.26■□□□□ 0.35
LINC00661-203ENST00000549131 TKFCQ3LXA3 575 aa17.26■□□□□ 0.35
LINC00661-203ENST00000549131 MSL3Q8N5Y2 521 aaKnown RBP17.26■□□□□ 0.35
LINC00661-203ENST00000549131 ARRDC4Q8NCT1 418 aa17.26■□□□□ 0.35
LINC00661-203ENST00000549131 TRERF1Q96PN7 1200 aa17.26■□□□□ 0.35
LINC00661-203ENST00000549131 KRT23Q9C075 422 aa17.26■□□□□ 0.35
LINC00661-203ENST00000549131 CNNM2Q9H8M5 875 aa17.26■□□□□ 0.35
LINC00661-203ENST00000549131 A1CFQ9NQ94 594 aaKnown RBP17.26■□□□□ 0.35
LINC00661-203ENST00000549131 ZHX1Q9UKY1 873 aaPredicted RBP17.26■□□□□ 0.35
LINC00661-203ENST00000549131 ZMYND8Q9ULU4 1186 aaPredicted RBP17.26■□□□□ 0.35
LINC00661-203ENST00000549131 LTBP2Q14767 1821 aa17.26■□□□□ 0.35
LINC00661-203ENST00000549131 ICAM1P05362 532 aa17.25■□□□□ 0.35
LINC00661-203ENST00000549131 AKR1A1P14550 325 aa17.25■□□□□ 0.35
LINC00661-203ENST00000549131 ZNF543Q08ER8 600 aa17.25■□□□□ 0.35
LINC00661-203ENST00000549131 CCDC178Q5BJE1 867 aa17.25■□□□□ 0.35
LINC00661-203ENST00000549131 BTNL9Q6UXG8 535 aa17.25■□□□□ 0.35
LINC00661-203ENST00000549131 ZNF467Q7Z7K2 595 aaPredicted RBP17.25■□□□□ 0.35
LINC00661-203ENST00000549131 LENG1Q96BZ8 264 aaPredicted RBP17.25■□□□□ 0.35
LINC00661-203ENST00000549131 ZSCAN10Q96SZ4 725 aaPredicted RBP17.25■□□□□ 0.35
LINC00661-203ENST00000549131 UBAC1Q9BSL1 405 aa17.25■□□□□ 0.35
LINC00661-203ENST00000549131 RANBP17Q9H2T7 1088 aaKnown RBP17.25■□□□□ 0.35
LINC00661-203ENST00000549131 KAT14Q9H8E8 782 aa17.25■□□□□ 0.35
LINC00661-203ENST00000549131 XPNPEP3Q9NQH7 507 aa17.25■□□□□ 0.35
LINC00661-203ENST00000549131 TNKSO95271 1327 aa17.24■□□□□ 0.35
LINC00661-203ENST00000549131 POTEB2H3BUK9 544 aa17.24■□□□□ 0.35
LINC00661-203ENST00000549131 ZNF865P0CJ78 1059 aaPredicted RBP17.24■□□□□ 0.35
LINC00661-203ENST00000549131 SYN1P17600 705 aa17.24■□□□□ 0.35
LINC00661-203ENST00000549131 ATN1P54259 1190 aaPredicted RBP17.24■□□□□ 0.35
LINC00661-203ENST00000549131 MUM1L1Q5H9M0 696 aa17.24■□□□□ 0.35
LINC00661-203ENST00000549131 MAMDC4Q6UXC1 1216 aa17.24■□□□□ 0.35
LINC00661-203ENST00000549131 NSMFQ6X4W1 530 aa17.24■□□□□ 0.35
LINC00661-203ENST00000549131 ARMCX2Q7L311 632 aa17.24■□□□□ 0.35
LINC00661-203ENST00000549131 DGKHQ86XP1 1220 aa17.24■□□□□ 0.35
LINC00661-203ENST00000549131 PNMA1Q8ND90 353 aa17.24■□□□□ 0.35
LINC00661-203ENST00000549131 FGD4Q96M96 766 aa17.24■□□□□ 0.35
LINC00661-203ENST00000549131 RBM27Q9P2N5 1060 aaKnown RBP17.24■□□□□ 0.35
LINC00661-203ENST00000549131 SNAI1O95863 264 aaPredicted RBP17.23■□□□□ 0.35
LINC00661-203ENST00000549131 GOLGA8HP0CJ92 632 aa17.23■□□□□ 0.35
LINC00661-203ENST00000549131 SNHG28P0DPA3 235 aa17.23■□□□□ 0.35
LINC00661-203ENST00000549131 CNTN2Q02246 1040 aa17.23■□□□□ 0.35
LINC00661-203ENST00000549131 LRRC41Q15345 812 aa17.23■□□□□ 0.35
LINC00661-203ENST00000549131 ENAHQ8N8S7 591 aaPredicted RBP17.23■□□□□ 0.35
LINC00661-203ENST00000549131 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.23■□□□□ 0.35
LINC00661-203ENST00000549131 SGSM2O43147 1006 aa17.22■□□□□ 0.35
LINC00661-203ENST00000549131 PGK1P00558 417 aa17.22■□□□□ 0.35
LINC00661-203ENST00000549131 PTH1RQ03431 593 aa17.22■□□□□ 0.35
LINC00661-203ENST00000549131 GPATCH4Q5T3I0 446 aaKnown RBP17.22■□□□□ 0.35
LINC00661-203ENST00000549131 CCDC144CPQ8IYA2 1237 aa17.22■□□□□ 0.35
LINC00661-203ENST00000549131 FAM133AQ8N9E0 248 aa17.22■□□□□ 0.35
LINC00661-203ENST00000549131 ZSWIM5Q9P217 1185 aa17.22■□□□□ 0.35
LINC00661-203ENST00000549131 SYNRGQ9UMZ2 1314 aa17.21■□□□□ 0.35
LINC00661-203ENST00000549131 TRDNQ13061 729 aa17.21■□□□□ 0.35
LINC00661-203ENST00000549131 ACVR2BQ13705 512 aa17.21■□□□□ 0.35
LINC00661-203ENST00000549131 CENPQQ7L2Z9 268 aaPredicted RBP17.21■□□□□ 0.35
LINC00661-203ENST00000549131 RNF180Q86T96 592 aa17.21■□□□□ 0.35
LINC00661-203ENST00000549131 FERMT2Q96AC1 680 aa17.21■□□□□ 0.35
LINC00661-203ENST00000549131 CPVLQ9H3G5 476 aa17.21■□□□□ 0.35
LINC00661-203ENST00000549131 ABHD16BQ9H3Z7 469 aa17.21■□□□□ 0.35
LINC00661-203ENST00000549131 CYP39A1Q9NYL5 469 aa17.21■□□□□ 0.35
LINC00661-203ENST00000549131 PCDH10Q9P2E7 1040 aa17.21■□□□□ 0.35
LINC00661-203ENST00000549131 FAM184BQ9ULE4 1060 aa17.21■□□□□ 0.35
LINC00661-203ENST00000549131 U3KPZ7 1027 aaPredicted RBP17.21■□□□□ 0.35
LINC00661-203ENST00000549131 NFIBO00712 420 aa17.2■□□□□ 0.34
LINC00661-203ENST00000549131 CYP21A2P08686 494 aa17.2■□□□□ 0.34
LINC00661-203ENST00000549131 ADCYAP1R1P41586 468 aa17.2■□□□□ 0.34
LINC00661-203ENST00000549131 RTP1P59025 263 aa17.2■□□□□ 0.34
LINC00661-203ENST00000549131 IFIT1BQ5T764 474 aaKnown RBP17.2■□□□□ 0.34
LINC00661-203ENST00000549131 RALYLQ86SE5 291 aaKnown RBP17.2■□□□□ 0.34
LINC00661-203ENST00000549131 ATP11BQ9Y2G3 1177 aa17.2■□□□□ 0.34
LINC00661-203ENST00000549131 WDR19Q8NEZ3 1342 aa17.2■□□□□ 0.34
LINC00661-203ENST00000549131 PTPDC1A2A3K4 754 aa17.19■□□□□ 0.34
LINC00661-203ENST00000549131 SOWAHBA6NEL2 793 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms