RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 ADCY7P51828 1080 aa23.38■■□□□ 1.33
SMPDL3A-203ENST00000539041 ORC2Q13416 577 aaPredicted RBP23.38■■□□□ 1.33
SMPDL3A-203ENST00000539041 CT47A1Q5JQC4 288 aaPredicted RBP23.38■■□□□ 1.33
SMPDL3A-203ENST00000539041 NEK8Q86SG6 692 aa23.38■■□□□ 1.33
SMPDL3A-203ENST00000539041 ADGRF4Q8IZF3 695 aa23.38■■□□□ 1.33
SMPDL3A-203ENST00000539041 MKL1Q969V6 931 aa23.38■■□□□ 1.33
SMPDL3A-203ENST00000539041 COA7Q96BR5 231 aa23.38■■□□□ 1.33
SMPDL3A-203ENST00000539041 KANSL2Q9H9L4 492 aa23.38■■□□□ 1.33
SMPDL3A-203ENST00000539041 CBFA2T2O43439 604 aa23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 ATP1A3P13637 1013 aa23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 ENOX1Q8TC92 643 aaKnown RBP23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 BIN2Q9UBW5 565 aaPredicted RBP23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 BRCA1P38398 1863 aaKnown RBP23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 COL4A5P29400 1685 aa23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 EEF2P13639 858 aaKnown RBP23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 DPEP1P16444 411 aa23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 GSDMDP57764 484 aa23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 LETM2Q2VYF4 491 aa23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 TTBK2Q6IQ55 1244 aa23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 RSBN1LQ6PCB5 846 aaPredicted RBP23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 FILIP1Q7Z7B0 1213 aa23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 LRRC8AQ8IWT6 810 aa23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 DCAF4Q8WV16 495 aa23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 PRMT6Q96LA8 375 aaPredicted RBP23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 FANCLQ9NW38 375 aa23.37■■□□□ 1.33
SMPDL3A-203ENST00000539041 GTPBP6O43824 516 aaPredicted RBP23.36■■□□□ 1.33
SMPDL3A-203ENST00000539041 OR52Z1P0C646 297 aa23.36■■□□□ 1.33
SMPDL3A-203ENST00000539041 ERCC5P28715 1186 aaPredicted RBP23.36■■□□□ 1.33
SMPDL3A-203ENST00000539041 JAKMIP3Q5VZ66 844 aa23.36■■□□□ 1.33
SMPDL3A-203ENST00000539041 TMEM179Q6ZVK1 233 aa23.36■■□□□ 1.33
SMPDL3A-203ENST00000539041 TBCKQ8TEA7 893 aa23.36■■□□□ 1.33
SMPDL3A-203ENST00000539041 MTMR8Q96EF0 704 aa23.36■■□□□ 1.33
SMPDL3A-203ENST00000539041 FER1L6Q2WGJ9 1857 aa23.36■■□□□ 1.33
SMPDL3A-203ENST00000539041 CCNT1O60563 726 aaKnown RBP23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 KCNA3P22001 575 aa23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 CASP1P29466 404 aa23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 FMR1Q06787 632 aaKnown RBP eCLIP23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 KCTD1Q719H9 257 aa23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 LARGE2Q8N3Y3 721 aa23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 CCSER1Q9C0I3 900 aa23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 TMEM260Q9NX78 707 aa23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 SERPINC1P01008 464 aa23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 STAT6P42226 847 aa23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 UBASH3AP57075 661 aa23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 TMC6Q7Z403 805 aa23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 DISC1Q9NRI5 854 aa23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 TMOD2Q9NZR1 351 aa23.35■■□□□ 1.33
SMPDL3A-203ENST00000539041 ZBTB5O15062 677 aa23.34■■□□□ 1.33
SMPDL3A-203ENST00000539041 SEPT2Q15019 361 aa23.34■■□□□ 1.33
SMPDL3A-203ENST00000539041 KARSQ15046 597 aaKnown RBP23.34■■□□□ 1.33
SMPDL3A-203ENST00000539041 ABCB5Q2M3G0 1257 aa23.34■■□□□ 1.33
SMPDL3A-203ENST00000539041 SHROOM1Q2M3G4 852 aaPredicted RBP23.34■■□□□ 1.33
SMPDL3A-203ENST00000539041 VPS33BQ9H267 617 aa23.34■■□□□ 1.33
SMPDL3A-203ENST00000539041 RIC8AQ9NPQ8 531 aa23.34■■□□□ 1.33
SMPDL3A-203ENST00000539041 HDAC9Q9UKV0 1011 aa23.34■■□□□ 1.33
SMPDL3A-203ENST00000539041 R3HCC1Q9Y3T6 440 aaKnown RBP23.34■■□□□ 1.33
SMPDL3A-203ENST00000539041 VIL1P09327 827 aaKnown RBP23.33■■□□□ 1.33
SMPDL3A-203ENST00000539041 CDC25AP30304 524 aa23.33■■□□□ 1.33
SMPDL3A-203ENST00000539041 SLC16A2P36021 539 aa23.33■■□□□ 1.33
SMPDL3A-203ENST00000539041 ICA1Q05084 483 aa23.33■■□□□ 1.33
SMPDL3A-203ENST00000539041 DHX8Q14562 1220 aaKnown RBP23.33■■□□□ 1.33
SMPDL3A-203ENST00000539041 DNTTIP2Q5QJE6 756 aaKnown RBP23.33■■□□□ 1.33
SMPDL3A-203ENST00000539041 SLFN13Q68D06 897 aa23.33■■□□□ 1.33
SMPDL3A-203ENST00000539041 STAMQ92783 540 aa23.33■■□□□ 1.33
SMPDL3A-203ENST00000539041 AK8Q96MA6 479 aa23.33■■□□□ 1.33
SMPDL3A-203ENST00000539041 NFE2L3Q9Y4A8 694 aa23.33■■□□□ 1.33
SMPDL3A-203ENST00000539041 USP17L10C9JJH3 530 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 PSMD14O00487 310 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 PPP1R11O60927 126 aaPredicted RBP23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 UBA7P41226 1012 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 TERF1P54274 439 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 ARID5BQ14865 1188 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 GMLQ99445 158 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 ZNF277Q9NRM2 450 aaPredicted RBP23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 SPDYE2BA6NHP3 402 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 RAD17O75943 681 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 GDF11O95390 407 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 SPDYE6P0CI01 402 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 RRAGBQ5VZM2 374 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 TRMT44Q8IYL2 757 aaKnown RBP23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 CCDC150Q8NCX0 1101 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 DPF2Q92785 391 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 MTRQ99707 1265 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 BLZF1Q9H2G9 400 aa23.32■■□□□ 1.32
SMPDL3A-203ENST00000539041 PP2D1A8MPX8 630 aa23.31■■□□□ 1.32
SMPDL3A-203ENST00000539041 ZNF18P17022 549 aa23.31■■□□□ 1.32
SMPDL3A-203ENST00000539041 SLC1A4P43007 532 aa23.31■■□□□ 1.32
SMPDL3A-203ENST00000539041 CUL4BQ13620 913 aa23.31■■□□□ 1.32
SMPDL3A-203ENST00000539041 RASSF8Q8NHQ8 419 aa23.31■■□□□ 1.32
SMPDL3A-203ENST00000539041 CUL5Q93034 780 aa23.31■■□□□ 1.32
SMPDL3A-203ENST00000539041 ATAD5Q96QE3 1844 aa23.31■■□□□ 1.32
SMPDL3A-203ENST00000539041 CD44P16070 742 aaKnown RBP23.3■■□□□ 1.32
SMPDL3A-203ENST00000539041 RBM26Q5T8P6 1007 aaKnown RBP23.3■■□□□ 1.32
SMPDL3A-203ENST00000539041 SIAH1Q8IUQ4 282 aa23.3■■□□□ 1.32
SMPDL3A-203ENST00000539041 MED15Q96RN5 788 aa23.3■■□□□ 1.32
SMPDL3A-203ENST00000539041 CSRNP1Q96S65 589 aa23.3■■□□□ 1.32
SMPDL3A-203ENST00000539041 RMND1Q9NWS8 449 aa23.3■■□□□ 1.32
SMPDL3A-203ENST00000539041 SYNRGQ9UMZ2 1314 aa23.3■■□□□ 1.32
SMPDL3A-203ENST00000539041 RAD21O60216 631 aa23.29■■□□□ 1.32
SMPDL3A-203ENST00000539041 CLK2P49760 499 aaKnown RBP23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms