RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ICAM1P05362 532 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 ZKSCAN1P17029 563 aaPredicted RBP15.19■□□□□ 0.02
VPS28-216ENST00000533806 MCM5P33992 734 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 HSPA4P34932 840 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 GJA8P48165 433 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 EXOSC10Q01780 885 aaKnown RBP15.19■□□□□ 0.02
VPS28-216ENST00000533806 KCTD2Q14681 263 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 TKFCQ3LXA3 575 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 ADCK5Q3MIX3 580 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 ASPRV1Q53RT3 343 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 RNF20Q5VTR2 975 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 DPP9Q86TI2 863 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 SHISA4Q96DD7 197 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 MMP19Q99542 508 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 RNF208Q9H0X6 261 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 GPHNQ9NQX3 736 aaPredicted RBP15.19■□□□□ 0.02
VPS28-216ENST00000533806 FBXO40Q9UH90 709 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 MAD2L2Q9UI95 211 aa15.19■□□□□ 0.02
VPS28-216ENST00000533806 ISY1Q9ULR0 285 aaKnown RBP15.19■□□□□ 0.02
VPS28-216ENST00000533806 DIS3Q9Y2L1 958 aaKnown RBP15.19■□□□□ 0.02
VPS28-216ENST00000533806 PALM3A6NDB9 673 aaPredicted RBP15.18■□□□□ 0.02
VPS28-216ENST00000533806 SH2B2O14492 632 aaPredicted RBP15.18■□□□□ 0.02
VPS28-216ENST00000533806 PGK2P07205 417 aa15.18■□□□□ 0.02
VPS28-216ENST00000533806 WTAPQ15007 396 aa15.18■□□□□ 0.02
VPS28-216ENST00000533806 SART3Q15020 963 aaKnown RBP15.18■□□□□ 0.02
VPS28-216ENST00000533806 SLC35G1Q2M3R5 365 aa15.18■□□□□ 0.02
VPS28-216ENST00000533806 TMEM67Q5HYA8 995 aa15.18■□□□□ 0.02
VPS28-216ENST00000533806 STAG2Q8N3U4 1231 aa15.18■□□□□ 0.02
VPS28-216ENST00000533806 MAML3Q96JK9 1138 aa15.18■□□□□ 0.02
VPS28-216ENST00000533806 UBA5Q9GZZ9 404 aa15.18■□□□□ 0.02
VPS28-216ENST00000533806 CRISPLD2Q9H0B8 497 aa15.18■□□□□ 0.02
VPS28-216ENST00000533806 CPVLQ9H3G5 476 aa15.18■□□□□ 0.02
VPS28-216ENST00000533806 CTDP1Q9Y5B0 961 aaPredicted RBP15.18■□□□□ 0.02
VPS28-216ENST00000533806 RBBP6Q7Z6E9 1792 aaKnown RBP15.17■□□□□ 0.02
VPS28-216ENST00000533806 ERICH2A1L162 156 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 REC8O95072 547 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 SGPL1O95470 568 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 PARP1P09874 1014 aaKnown RBP15.17■□□□□ 0.02
VPS28-216ENST00000533806 PRKAR2AP13861 404 aaKnown RBP15.17■□□□□ 0.02
VPS28-216ENST00000533806 LIFRP42702 1097 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 GRM4Q14833 912 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 MUM1L1Q5H9M0 696 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 CCDC174Q6PII3 467 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 UBE2Q1Q7Z7E8 422 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 ADGRF4Q8IZF3 695 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 MTMR8Q96EF0 704 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 TMEM87BQ96K49 555 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 FGD4Q96M96 766 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 TRERF1Q96PN7 1200 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 MAP3K14Q99558 947 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.17■□□□□ 0.023e-6■■□□□ 14.1
VPS28-216ENST00000533806 HMX1Q9NP08 348 aaPredicted RBP15.17■□□□□ 0.02
VPS28-216ENST00000533806 SLC5A4Q9NY91 659 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 WDR19Q8NEZ3 1342 aa15.17■□□□□ 0.02
VPS28-216ENST00000533806 KLRF2D3W0D1 207 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 CAPN2P17655 700 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 CYP2C19P33261 490 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 MFSD14CQ5VZR4 134 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 TMTC2Q8N394 836 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 TRPV1Q8NER1 839 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 U2AF1L4Q8WU68 220 aaKnown RBP15.16■□□□□ 0.02
VPS28-216ENST00000533806 CLEC4DQ8WXI8 215 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 NEK1Q96PY6 1258 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 USP26Q9BXU7 913 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 ACAD9Q9H845 621 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 JMJD4Q9H9V9 463 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 A1CFQ9NQ94 594 aaKnown RBP15.16■□□□□ 0.02
VPS28-216ENST00000533806 RNF146Q9NTX7 359 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 CCPG1Q9ULG6 757 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 SNX14Q9Y5W7 946 aa15.16■□□□□ 0.02
VPS28-216ENST00000533806 ALAS1P13196 640 aa15.15■□□□□ 0.02
VPS28-216ENST00000533806 CYBAP13498 195 aa15.15■□□□□ 0.02
VPS28-216ENST00000533806 TAL1P17542 331 aaPredicted RBP15.15■□□□□ 0.02
VPS28-216ENST00000533806 CCND3P30281 292 aaPredicted RBP15.15■□□□□ 0.02
VPS28-216ENST00000533806 SLC4A3P48751 1232 aa15.15■□□□□ 0.02
VPS28-216ENST00000533806 KRT32Q14532 448 aa15.15■□□□□ 0.02
VPS28-216ENST00000533806 LHX8Q68G74 356 aa15.15■□□□□ 0.02
VPS28-216ENST00000533806 MAMDC4Q6UXC1 1216 aa15.15■□□□□ 0.02
VPS28-216ENST00000533806 DHX32Q7L7V1 743 aaKnown RBP15.15■□□□□ 0.02
VPS28-216ENST00000533806 ZNF467Q7Z7K2 595 aaPredicted RBP15.15■□□□□ 0.02
VPS28-216ENST00000533806 SGMS1Q86VZ5 419 aa15.15■□□□□ 0.02
VPS28-216ENST00000533806 FAM133AQ8N9E0 248 aa15.15■□□□□ 0.02
VPS28-216ENST00000533806 DEFB118Q96PH6 123 aa15.15■□□□□ 0.02
VPS28-216ENST00000533806 HOMER2Q9NSB8 354 aa15.15■□□□□ 0.02
VPS28-216ENST00000533806 PNMA2Q9UL42 364 aa15.15■□□□□ 0.02
VPS28-216ENST00000533806 CYTH3O43739 400 aa15.14■□□□□ 0.01
VPS28-216ENST00000533806 MNX1P50219 401 aaPredicted RBP15.14■□□□□ 0.01
VPS28-216ENST00000533806 CATIPQ7Z7H3 387 aa15.14■□□□□ 0.01
VPS28-216ENST00000533806 ZNF654Q8IZM8 581 aa15.14■□□□□ 0.01
VPS28-216ENST00000533806 ANKRD35Q8N283 1001 aa15.14■□□□□ 0.01
VPS28-216ENST00000533806 MSL3Q8N5Y2 521 aaKnown RBP15.14■□□□□ 0.01
VPS28-216ENST00000533806 DDX11Q96FC9 970 aa15.14■□□□□ 0.01
VPS28-216ENST00000533806 TINF2Q9BSI4 451 aa15.14■□□□□ 0.01
VPS28-216ENST00000533806 RIOX1Q9H6W3 641 aa15.14■□□□□ 0.01
VPS28-216ENST00000533806 CYP39A1Q9NYL5 469 aa15.14■□□□□ 0.01
VPS28-216ENST00000533806 ASTN1O14525 1302 aa15.14■□□□□ 0.01
VPS28-216ENST00000533806 SOWAHBA6NEL2 793 aa15.13■□□□□ 0.01
VPS28-216ENST00000533806 NFIBO00712 420 aa15.13■□□□□ 0.01
VPS28-216ENST00000533806 DDAH1O94760 285 aa15.13■□□□□ 0.01
VPS28-216ENST00000533806 CNTN2Q02246 1040 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms