RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 OLFML2BQ68BL8 750 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 DPP9Q86TI2 863 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 KCNB2Q92953 911 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 TMEM87BQ96K49 555 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 UNC93B1Q9H1C4 597 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 PNMA2Q9UL42 364 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 WDR19Q8NEZ3 1342 aa17.57■□□□□ 0.4
CPSF1-208ENST00000532560 HSPA4P34932 840 aa17.57■□□□□ 0.4
CPSF1-208ENST00000532560 TRIM32Q13049 653 aa17.57■□□□□ 0.4
CPSF1-208ENST00000532560 COL9A3Q14050 684 aaPredicted RBP17.57■□□□□ 0.4
CPSF1-208ENST00000532560 CCDC174Q6PII3 467 aa17.57■□□□□ 0.4
CPSF1-208ENST00000532560 RASEFQ8IZ41 740 aa17.57■□□□□ 0.4
CPSF1-208ENST00000532560 AGBL1Q96MI9 1066 aa17.57■□□□□ 0.4
CPSF1-208ENST00000532560 NEK1Q96PY6 1258 aa17.57■□□□□ 0.4
CPSF1-208ENST00000532560 RNF208Q9H0X6 261 aa17.57■□□□□ 0.4
CPSF1-208ENST00000532560 ACAD9Q9H845 621 aa17.57■□□□□ 0.4
CPSF1-208ENST00000532560 LY9Q9HBG7 655 aa17.57■□□□□ 0.4
CPSF1-208ENST00000532560 SENP2Q9HC62 589 aa17.57■□□□□ 0.4
CPSF1-208ENST00000532560 PAK6Q9NQU5 681 aaPredicted RBP17.57■□□□□ 0.4
CPSF1-208ENST00000532560 FLRT1Q9NZU1 646 aa17.57■□□□□ 0.4
CPSF1-208ENST00000532560 ZNFX1Q9P2E3 1918 aaKnown RBP17.57■□□□□ 0.4
CPSF1-208ENST00000532560 RPTORQ8N122 1335 aa17.56■□□□□ 0.4
CPSF1-208ENST00000532560 SH2B2O14492 632 aaPredicted RBP17.56■□□□□ 0.4
CPSF1-208ENST00000532560 GJB1P08034 283 aa17.56■□□□□ 0.4
CPSF1-208ENST00000532560 PRKAR2AP13861 404 aaKnown RBP17.56■□□□□ 0.4
CPSF1-208ENST00000532560 SNAP25P60880 206 aa17.56■□□□□ 0.4
CPSF1-208ENST00000532560 GRM4Q14833 912 aa17.56■□□□□ 0.4
CPSF1-208ENST00000532560 MFSD14CQ5VZR4 134 aa17.56■□□□□ 0.4
CPSF1-208ENST00000532560 HOMER2Q9NSB8 354 aa17.56■□□□□ 0.4
CPSF1-208ENST00000532560 RNF146Q9NTX7 359 aa17.56■□□□□ 0.4
CPSF1-208ENST00000532560 CCPG1Q9ULG6 757 aa17.56■□□□□ 0.4
CPSF1-208ENST00000532560 DIS3Q9Y2L1 958 aaKnown RBP17.56■□□□□ 0.4
CPSF1-208ENST00000532560 PLXNA1Q9UIW2 1896 aa17.56■□□□□ 0.4
CPSF1-208ENST00000532560 DNAJC25-GNG10A0A024R161 153 aa17.55■□□□□ 0.4
CPSF1-208ENST00000532560 LIFRP42702 1097 aa17.55■□□□□ 0.4
CPSF1-208ENST00000532560 SLC4A3P48751 1232 aa17.55■□□□□ 0.4
CPSF1-208ENST00000532560 CACNB2Q08289 660 aaPredicted RBP17.55■□□□□ 0.4
CPSF1-208ENST00000532560 TROAPQ12815 778 aa17.55■□□□□ 0.4
CPSF1-208ENST00000532560 ZNF792Q3KQV3 632 aa17.55■□□□□ 0.4
CPSF1-208ENST00000532560 ADCK5Q3MIX3 580 aa17.55■□□□□ 0.4
CPSF1-208ENST00000532560 CATIPQ7Z7H3 387 aa17.55■□□□□ 0.4
CPSF1-208ENST00000532560 TMTC2Q8N394 836 aa17.55■□□□□ 0.4
CPSF1-208ENST00000532560 MAML3Q96JK9 1138 aa17.55■□□□□ 0.4
CPSF1-208ENST00000532560 TRERF1Q96PN7 1200 aa17.55■□□□□ 0.4
CPSF1-208ENST00000532560 UBA5Q9GZZ9 404 aa17.55■□□□□ 0.4
CPSF1-208ENST00000532560 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.55■□□□□ 0.4
CPSF1-208ENST00000532560 MAD2L2Q9UI95 211 aa17.55■□□□□ 0.4
CPSF1-208ENST00000532560 PALM3A6NDB9 673 aaPredicted RBP17.54■□□□□ 0.4
CPSF1-208ENST00000532560 DDAH1O94760 285 aa17.54■□□□□ 0.4
CPSF1-208ENST00000532560 PGK2P07205 417 aa17.54■□□□□ 0.4
CPSF1-208ENST00000532560 HMGB1P09429 215 aaKnown RBP17.54■□□□□ 0.4
CPSF1-208ENST00000532560 ALAS1P13196 640 aa17.54■□□□□ 0.4
CPSF1-208ENST00000532560 GJA8P48165 433 aa17.54■□□□□ 0.4
CPSF1-208ENST00000532560 ADGRF4Q8IZF3 695 aa17.54■□□□□ 0.4
CPSF1-208ENST00000532560 STAG2Q8N3U4 1231 aa17.54■□□□□ 0.4
CPSF1-208ENST00000532560 MAP3K14Q99558 947 aa17.54■□□□□ 0.4
CPSF1-208ENST00000532560 CPVLQ9H3G5 476 aa17.54■□□□□ 0.4
CPSF1-208ENST00000532560 HMX1Q9NP08 348 aaPredicted RBP17.54■□□□□ 0.4
CPSF1-208ENST00000532560 GPHNQ9NQX3 736 aaPredicted RBP17.54■□□□□ 0.4
CPSF1-208ENST00000532560 PFASO15067 1338 aa17.53■□□□□ 0.4
CPSF1-208ENST00000532560 CAPN2P17655 700 aa17.53■□□□□ 0.4
CPSF1-208ENST00000532560 EN2P19622 333 aaPredicted RBP17.53■□□□□ 0.4
CPSF1-208ENST00000532560 EXOSC10Q01780 885 aaKnown RBP17.53■□□□□ 0.4
CPSF1-208ENST00000532560 CDC37Q16543 378 aaPredicted RBP17.53■□□□□ 0.4
CPSF1-208ENST00000532560 DHX32Q7L7V1 743 aaKnown RBP17.53■□□□□ 0.4
CPSF1-208ENST00000532560 SGMS1Q86VZ5 419 aa17.53■□□□□ 0.4
CPSF1-208ENST00000532560 ZNF654Q8IZM8 581 aa17.53■□□□□ 0.4
CPSF1-208ENST00000532560 ANKRD35Q8N283 1001 aa17.53■□□□□ 0.4
CPSF1-208ENST00000532560 U2AF1L4Q8WU68 220 aaKnown RBP17.53■□□□□ 0.4
CPSF1-208ENST00000532560 SHISA4Q96DD7 197 aa17.53■□□□□ 0.4
CPSF1-208ENST00000532560 DDX11Q96FC9 970 aa17.53■□□□□ 0.4
CPSF1-208ENST00000532560 A1CFQ9NQ94 594 aaKnown RBP17.53■□□□□ 0.4
CPSF1-208ENST00000532560 CCDC69A6NI79 296 aa17.52■□□□□ 0.4
CPSF1-208ENST00000532560 KLRF2D3W0D1 207 aa17.52■□□□□ 0.4
CPSF1-208ENST00000532560 CYBAP13498 195 aa17.52■□□□□ 0.4
CPSF1-208ENST00000532560 CYP2C19P33261 490 aa17.52■□□□□ 0.4
CPSF1-208ENST00000532560 MUM1L1Q5H9M0 696 aa17.52■□□□□ 0.4
CPSF1-208ENST00000532560 NFXL1Q6ZNB6 911 aa17.52■□□□□ 0.4
CPSF1-208ENST00000532560 ZNF467Q7Z7K2 595 aaPredicted RBP17.52■□□□□ 0.4
CPSF1-208ENST00000532560 MSL3Q8N5Y2 521 aaKnown RBP17.52■□□□□ 0.4
CPSF1-208ENST00000532560 USP26Q9BXU7 913 aa17.52■□□□□ 0.4
CPSF1-208ENST00000532560 JMJD4Q9H9V9 463 aa17.52■□□□□ 0.4
CPSF1-208ENST00000532560 SNX14Q9Y5W7 946 aa17.52■□□□□ 0.4
CPSF1-208ENST00000532560 SGPL1O95470 568 aa17.51■□□□□ 0.39
CPSF1-208ENST00000532560 TAL1P17542 331 aaPredicted RBP17.51■□□□□ 0.39
CPSF1-208ENST00000532560 KIF5BP33176 963 aa17.51■□□□□ 0.39
CPSF1-208ENST00000532560 MTMR8Q96EF0 704 aa17.51■□□□□ 0.39
CPSF1-208ENST00000532560 JAKMIP1Q96N16 626 aaKnown RBP17.51■□□□□ 0.39
CPSF1-208ENST00000532560 DEFB118Q96PH6 123 aa17.51■□□□□ 0.39
CPSF1-208ENST00000532560 TINF2Q9BSI4 451 aa17.51■□□□□ 0.39
CPSF1-208ENST00000532560 LRRC2Q9BYS8 371 aa17.51■□□□□ 0.39
CPSF1-208ENST00000532560 CRISPLD2Q9H0B8 497 aa17.51■□□□□ 0.39
CPSF1-208ENST00000532560 NRBP1Q9UHY1 535 aa17.51■□□□□ 0.39
CPSF1-208ENST00000532560 SMCHD1A6NHR9 2005 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 SYNGAP1Q96PV0 1343 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 BRCA2P51587 3418 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 DHX16O60231 1041 aaKnown RBP17.5■□□□□ 0.39
CPSF1-208ENST00000532560 CALM1P0DP23 149 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 CALM2P0DP24 149 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 CALM3P0DP25 149 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms