RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 LRCH2Q5VUJ6 765 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 ARMCX2Q7L311 632 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 NLRP7Q8WX94 980 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 PARK7Q99497 189 aaKnown RBP4.69□□□□□ -1.66
VCAN-209ENST00000513016 PIDD1Q9HB75 910 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 KCNH3Q9ULD8 1083 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 ZNRF3Q9ULT6 936 aa4.69□□□□□ -1.66
VCAN-209ENST00000513016 INO80B-WBP1J3KQ70 363 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 OPA1O60313 960 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 IGHDP01880 384 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 STX17P56962 302 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 PRPSAP1Q14558 356 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 TAF1CQ15572 869 aaPredicted RBP4.68□□□□□ -1.66
VCAN-209ENST00000513016 PPP1R21Q6ZMI0 780 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 FANCBQ8NB91 859 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 CCDC110Q8TBZ0 833 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 APOL6Q9BWW8 343 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 AFG3L2Q9Y4W6 797 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 PCDHB15Q9Y5E8 787 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 MYO5CQ9NQX4 1742 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 ROBO2Q9HCK4 1378 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 USP17L15C9J2P7 530 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 USP17L10C9JJH3 530 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 USP17L13C9JLJ4 530 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 USP17L11C9JVI0 530 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 USP17L18D6R9N7 530 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 USP17L22D6RA61 530 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 USP17L17D6RBQ6 530 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 USP17L19D6RCP7 530 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 USP17L20D6RJB6 530 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 IVLP07476 585 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 ACTN1P12814 892 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 PTGS1P23219 599 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 USP17L24Q0WX57 530 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 GEN1Q17RS7 908 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 KRT40Q6A162 431 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 CTR9Q6PD62 1173 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 DSTYKQ6XUX3 929 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 MYOCDQ8IZQ8 938 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 AOPEPQ8N6M6 819 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 SSH3Q8TE77 659 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 CRAMP1Q96RY5 1269 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 PLCD4Q9BRC7 762 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 TBC1D2Q9BYX2 928 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 TNKSO95271 1327 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 MED23Q9ULK4 1368 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 SGSM2O43147 1006 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 FCER1AP12319 257 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 RPS12P25398 132 aaKnown RBP4.68□□□□□ -1.66
VCAN-209ENST00000513016 LACTBP83111 547 aaPredicted RBP4.68□□□□□ -1.66
VCAN-209ENST00000513016 TNFAIP2Q03169 654 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 PPP2R3AQ06190 1150 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 TTLL4Q14679 1199 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 SRRTQ9BXP5 876 aaKnown RBP4.68□□□□□ -1.66
VCAN-209ENST00000513016 TRIM7Q9C029 511 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 MKRN1Q9UHC7 482 aaKnown RBP4.68□□□□□ -1.66
VCAN-209ENST00000513016 MYOM2P54296 1465 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 E7EWF7 191 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 ACTN4O43707 911 aaKnown RBP4.68□□□□□ -1.66
VCAN-209ENST00000513016 HEXIM1O94992 359 aaKnown RBP4.68□□□□□ -1.66
VCAN-209ENST00000513016 CBX1P83916 185 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 ALCAMQ13740 583 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 BEND3Q5T5X7 828 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 DYMQ7RTS9 669 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 MMP19Q99542 508 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 GDPD2Q9HCC8 539 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 FAM184BQ9ULE4 1060 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 ARHGAP31Q2M1Z3 1444 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 MYCP01106 439 aaPredicted RBP4.68□□□□□ -1.66
VCAN-209ENST00000513016 CDC42EP1Q00587 391 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 MYO1EQ12965 1108 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 KRT81Q14533 505 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 RNF207Q6ZRF8 634 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 YAF2Q8IY57 180 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 EFCAB13Q8IY85 973 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 C7orf31Q8N865 590 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 ACCSQ96QU6 501 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 ST7Q9NRC1 585 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 CRB1P82279 1406 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 CTAGE9A4FU28 777 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 KCNQ3O43525 872 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 MXRA7P84157 204 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 FAM160A1Q05DH4 1040 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 NEDD9Q14511 834 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 TKFCQ3LXA3 575 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 SUSD4Q5VX71 490 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 CUEDC2Q9H467 287 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 PFDN4Q9NQP4 134 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 CTTNBP2NLQ9P2B4 639 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 CTNND2Q9UQB3 1225 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 TNNQ9UQP3 1299 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 PHKA1P46020 1223 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 SNAPC2Q13487 334 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 TUBB2AQ13885 445 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 KLHL40Q2TBA0 621 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 MAP7D3Q8IWC1 876 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 GANCQ8TET4 914 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 ARHGEF1Q92888 912 aaKnown RBP4.68□□□□□ -1.66
VCAN-209ENST00000513016 SLF1Q9BQI6 1058 aa4.68□□□□□ -1.66
VCAN-209ENST00000513016 TUBB2BQ9BVA1 445 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms