RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 COL1A1P02452 1464 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 USP17L3A6NCW0 530 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 USP17L4A6NCW7 530 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 CALML3P27482 149 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 KIF5BP33176 963 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 USP17L1Q7RTZ2 530 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 TRIM34Q9BYJ4 488 aa10.38□□□□□ -0.75
LIMCH1-215ENST00000512632 STIM1Q13586 685 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 KRT26Q7Z3Y9 468 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 LRRC15Q8TF66 581 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 JAKMIP2Q96AA8 810 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 PYM1Q9BRP8 204 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 JADE2Q9NQC1 790 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 MTIF2P46199 727 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 ARL6IP4Q66PJ3 421 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 TRAPPC11Q7Z392 1133 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 PAPPAQ13219 1627 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 STRCP1A6NGW2 1772 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 MYO1CO00159 1063 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 IPO7O95373 1038 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 FGRP09769 529 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 USP14P54578 494 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 SLC44A5Q8NCS7 719 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 ZNF507Q8TCN5 953 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 SMCR8Q8TEV9 937 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 FAM204AQ9H8W3 233 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 MKNK2Q9HBH9 465 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 ZNHIT6Q9NWK9 470 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 CWC15Q9P013 229 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 CAPN11Q9UMQ6 739 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 PCDHA4Q9UN74 947 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 KLRC4O43908 158 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 ORC4O43929 436 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 PDE4DQ08499 809 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 STK4Q13043 487 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 TXNRD3Q86VQ6 643 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 PSMB7Q99436 277 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 VAT1LQ9HCJ6 419 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 PSD3Q9NYI0 1048 aa10.37□□□□□ -0.75
LIMCH1-215ENST00000512632 PDE2AO00408 941 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 LETM2Q2VYF4 491 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 TTI2Q6NXR4 508 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 DUSP9Q99956 384 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 IL17RBQ9NRM6 502 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 KRT86O43790 486 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 FCER1AP12319 257 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 HIBADHP31937 336 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 MATR3P43243 847 aaKnown RBP eCLIP10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 DNM2P50570 870 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 TUBB4BP68371 445 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 ASIC1P78348 528 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 ANKRD40Q6AI12 368 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 BSDC1Q9NW68 430 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 PLEKP08567 350 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 PLCG1P19174 1290 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 SLC35G1Q2M3R5 365 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 DNAJC7Q99615 494 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 NHEJ1Q9H9Q4 299 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 RSPH14Q9UHP6 348 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 MYH8P13535 1937 aa10.36□□□□□ -0.75
LIMCH1-215ENST00000512632 PSMD14O00487 310 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 ADAMTS2O95450 1211 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 EEF1GP26641 437 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 KRT83P78385 493 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 FKBP15Q5T1M5 1219 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 PCDHA6Q9UN73 950 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 PCDHA8Q9Y5H6 950 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 BAZ2AQ9UIF9 1905 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 RASSF10A6NK89 507 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 CYTH3O43739 400 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 RNF40O75150 1001 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 IDEP14735 1019 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 CYLC1P35663 651 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 FAM71BQ8TC56 605 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 CNOT6LQ96LI5 555 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 NOC4LQ9BVI4 516 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 EXOC1Q9NV70 894 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 NUP98P52948 1817 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 KCNQ2O43526 872 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 MYBL2P10244 700 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 PCP11498 1178 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 TXNRD1Q16881 649 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 WDR93Q6P2C0 686 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 FBXO33Q7Z6M2 555 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 SLC51AQ86UW1 340 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 DZIP1Q86YF9 867 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 GIMAP8Q8ND71 665 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 ACBD3Q9H3P7 528 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 ATP8A2Q9NTI2 1148 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 RRP15Q9Y3B9 282 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 A0A1W2PQC6 194 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 SRGNP10124 158 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 RPS8P62241 208 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 C2orf54Q08AI8 447 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 DDB1Q16531 1140 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 CABP7Q86V35 215 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 ANKRD13CQ8N6S4 541 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 GOLGA6L1Q8N7Z2 621 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 SLC39A2Q9NP94 309 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms