RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 SYDE2Q5VT97 1194 aa13.64□□□□□ -0.23
SH3RF1-205ENST00000511421 CCDC174Q6PII3 467 aa13.64□□□□□ -0.23
SH3RF1-205ENST00000511421 CYB5R4Q7L1T6 521 aa13.64□□□□□ -0.23
SH3RF1-205ENST00000511421 TINF2Q9BSI4 451 aa13.64□□□□□ -0.23
SH3RF1-205ENST00000511421 ESYT1Q9BSJ8 1104 aa13.64□□□□□ -0.23
SH3RF1-205ENST00000511421 LSG1Q9H089 658 aaKnown RBP13.64□□□□□ -0.23
SH3RF1-205ENST00000511421 TNKSO95271 1327 aa13.64□□□□□ -0.23
SH3RF1-205ENST00000511421 CNGA1P29973 690 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 SEC23AQ15436 765 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 TKFCQ3LXA3 575 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 STOX1Q6ZVD7 989 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 NECAB2Q7Z6G3 386 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 PNMA1Q8ND90 353 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 DDX11Q96FC9 970 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 HOMER2Q9NSB8 354 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 RNF146Q9NTX7 359 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 RBM8AQ9Y5S9 174 aaKnown RBP13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 MSCO60682 206 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 TAL1P17542 331 aaPredicted RBP13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 ANKRD35Q8N283 1001 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 MSL3Q8N5Y2 521 aaKnown RBP13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 FGD4Q96M96 766 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 TRERF1Q96PN7 1200 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 UBAC1Q9BSL1 405 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 HTATIP2Q9BUP3 242 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 ACAD9Q9H845 621 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 KAT14Q9H8E8 782 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 NRBP1Q9UHY1 535 aa13.63□□□□□ -0.23
SH3RF1-205ENST00000511421 CEP290O15078 2479 aa13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 E7EWF7 191 aa13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 SEPT4O43236 478 aa13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 ICAM1P05362 532 aa13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 GOLGA8HP0CJ92 632 aa13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 COL6A1P12109 1028 aa13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 ALAS1P13196 640 aa13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 MUM1L1Q5H9M0 696 aa13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 GPATCH4Q5T3I0 446 aaKnown RBP13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 MAMDC4Q6UXC1 1216 aa13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 ZNF467Q7Z7K2 595 aaPredicted RBP13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 DPF3Q92784 378 aa13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 A1CFQ9NQ94 594 aaKnown RBP13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 CCPG1Q9ULG6 757 aa13.62□□□□□ -0.23
SH3RF1-205ENST00000511421 ZNF865P0CJ78 1059 aaPredicted RBP13.61□□□□□ -0.23
SH3RF1-205ENST00000511421 TRDNQ13061 729 aa13.61□□□□□ -0.23
SH3RF1-205ENST00000511421 KIAA1211Q6ZU35 1233 aa13.61□□□□□ -0.23
SH3RF1-205ENST00000511421 FAM133AQ8N9E0 248 aa13.61□□□□□ -0.23
SH3RF1-205ENST00000511421 CPVLQ9H3G5 476 aa13.61□□□□□ -0.23
SH3RF1-205ENST00000511421 C11orf49Q9H6J7 331 aa13.61□□□□□ -0.23
SH3RF1-205ENST00000511421 SNAI1O95863 264 aaPredicted RBP13.6□□□□□ -0.23
SH3RF1-205ENST00000511421 NEFLP07196 543 aa13.6□□□□□ -0.23
SH3RF1-205ENST00000511421 CNTN2Q02246 1040 aa13.6□□□□□ -0.23
SH3RF1-205ENST00000511421 IFIT1BQ5T764 474 aaKnown RBP13.6□□□□□ -0.23
SH3RF1-205ENST00000511421 ANO1Q5XXA6 986 aa13.6□□□□□ -0.23
SH3RF1-205ENST00000511421 NCOA7Q8NI08 942 aa13.6□□□□□ -0.23
SH3RF1-205ENST00000511421 UBA5Q9GZZ9 404 aa13.6□□□□□ -0.23
SH3RF1-205ENST00000511421 PFASO15067 1338 aa13.6□□□□□ -0.23
SH3RF1-205ENST00000511421 SYNGAP1Q96PV0 1343 aa13.6□□□□□ -0.23
SH3RF1-205ENST00000511421 SMCHD1A6NHR9 2005 aa13.6□□□□□ -0.23
SH3RF1-205ENST00000511421 PLXNA1Q9UIW2 1896 aa13.6□□□□□ -0.23
SH3RF1-205ENST00000511421 H0YGN5 161 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 POTEB2H3BUK9 544 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 ANTXR2P58335 489 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 ASPRV1Q53RT3 343 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 MB21D2Q8IYB1 491 aaPredicted RBP13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 SOWAHBA6NEL2 793 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 ASTN1O14525 1302 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 PARP1P09874 1014 aaKnown RBP13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 NECTIN1Q15223 517 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 RALYLQ86SE5 291 aaKnown RBP13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 WDR19Q8NEZ3 1342 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 CLEC4DQ8WXI8 215 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 SENP2Q9HC62 589 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 ANO2Q9NQ90 1003 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 CYP39A1Q9NYL5 469 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 CNPY2Q9Y2B0 182 aa13.59□□□□□ -0.23
SH3RF1-205ENST00000511421 NFIBO00712 420 aa13.58□□□□□ -0.24
SH3RF1-205ENST00000511421 IFIT3O14879 490 aaKnown RBP13.58□□□□□ -0.24
SH3RF1-205ENST00000511421 SLC27A2O14975 620 aa13.58□□□□□ -0.24
SH3RF1-205ENST00000511421 CDC45O75419 566 aa13.58□□□□□ -0.24
SH3RF1-205ENST00000511421 CREB3L3Q68CJ9 461 aa13.58□□□□□ -0.24
SH3RF1-205ENST00000511421 CHST3Q7LGC8 479 aa13.58□□□□□ -0.24
SH3RF1-205ENST00000511421 ADGRF4Q8IZF3 695 aa13.58□□□□□ -0.24
SH3RF1-205ENST00000511421 STAG2Q8N3U4 1231 aa13.58□□□□□ -0.24
SH3RF1-205ENST00000511421 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.58□□□□□ -0.24
SH3RF1-205ENST00000511421 PNMA2Q9UL42 364 aa13.58□□□□□ -0.24
SH3RF1-205ENST00000511421 FRMPD3Q5JV73 1810 aa13.58□□□□□ -0.24
SH3RF1-205ENST00000511421 DNM1LO00429 736 aa13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 EVI5O60447 810 aa13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 AKR1A1P14550 325 aa13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 ACVR2BQ13705 512 aa13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 COL9A3Q14050 684 aaPredicted RBP13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 GJC2Q5T442 439 aaPredicted RBP13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 NSMFQ6X4W1 530 aa13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 ARMCX2Q7L311 632 aa13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 CCDC144CPQ8IYA2 1237 aa13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 ARRDC4Q8NCT1 418 aa13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 IGDCC4Q8TDY8 1250 aa13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 PURBQ96QR8 312 aaKnown RBP13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 KATNBL1Q9H079 304 aa13.57□□□□□ -0.24
SH3RF1-205ENST00000511421 NR2E3Q9Y5X4 410 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms