RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 ARHGAP9Q9BRR9 750 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 CENPHQ9H3R5 247 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 LGR6Q9HBX8 967 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 RABGAP1Q9Y3P9 1069 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 INSRP06213 1382 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 HEG1Q9ULI3 1381 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 SDK1Q7Z5N4 2213 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 SOBPA7XYQ1 873 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 H0YC42 278 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 TRIM66O15016 1216 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 ERC2O15083 957 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 ABL2P42684 1182 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 MTMR3Q13615 1198 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 EIF4A2Q14240 407 aaKnown RBP5.78□□□□□ -1.48
USP54-216ENST00000498143 SUSD4Q5VX71 490 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 ICE2Q659A1 982 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 PDCD7Q8N8D1 485 aaKnown RBP5.78□□□□□ -1.48
USP54-216ENST00000498143 ATL2Q8NHH9 583 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 GIPC2Q8TF65 315 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 PRIMPOLQ96LW4 560 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 UTP6Q9NYH9 597 aaKnown RBP5.78□□□□□ -1.48
USP54-216ENST00000498143 ZFHX2Q9C0A1 2572 aaPredicted RBP5.78□□□□□ -1.48
USP54-216ENST00000498143 BCL9O00512 1426 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 ZNF804BA4D1E1 1349 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 DCDC2BA2VCK2 349 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 ZMYND10O75800 440 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 TCF3P15923 654 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 CCT4P50991 539 aaKnown RBP5.78□□□□□ -1.48
USP54-216ENST00000498143 PSMD7P51665 324 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 TRAF1Q13077 416 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 UBE4AQ14139 1066 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 FILIP1LQ4L180 1135 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 CCDC80Q76M96 950 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 EPSTI1Q96J88 318 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 GUCD1Q96NT3 240 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 SH3GL3Q99963 347 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 SLC32A1Q9H598 525 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 ZNF70Q9UC06 446 aaPredicted RBP5.78□□□□□ -1.48
USP54-216ENST00000498143 PDE8AO60658 829 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 KRT37O76014 449 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 FOXC1Q12948 553 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 TMED1Q13445 227 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 CHST3Q7LGC8 479 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 RSPH3Q86UC2 560 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 CTNNBL1Q8WYA6 563 aaPredicted RBP5.78□□□□□ -1.48
USP54-216ENST00000498143 R3HDMLQ9H3Y0 253 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 FBXO9Q9UK97 447 aaPredicted RBP5.78□□□□□ -1.48
USP54-216ENST00000498143 RABL2BQ9UNT1 228 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 USP16Q9Y5T5 823 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 TESPA1A2RU30 521 aaPredicted RBP5.78□□□□□ -1.48
USP54-216ENST00000498143 USP17L5A8MUK1 530 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 VIL1P09327 827 aaKnown RBP5.78□□□□□ -1.48
USP54-216ENST00000498143 FERP16591 822 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 GBP1P32455 592 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 CYP2C19P33261 490 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 CACNB3P54284 484 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 BIRC3Q13489 604 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 DAB2IPQ5VWQ8 1189 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 CNTNAP3BQ96NU0 1288 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 NEK1Q96PY6 1258 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 BCO2Q9BYV7 579 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 CNTNAP3Q9BZ76 1288 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 TLE6Q9H808 572 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 NR2E1Q9Y466 385 aa5.78□□□□□ -1.48
USP54-216ENST00000498143 ZBED4O75132 1171 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 S100BP04271 92 aaPredicted RBP5.77□□□□□ -1.49
USP54-216ENST00000498143 VCAM1P19320 739 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 PRKAR2BP31323 418 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 GPM6BQ13491 265 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 IKBKEQ14164 716 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 TBC1D9Q6ZT07 1266 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 CPXCR1Q8N123 301 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 C17orf50Q8WW18 174 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 DDX27Q96GQ7 796 aaKnown RBP5.77□□□□□ -1.49
USP54-216ENST00000498143 SHDQ96IW2 340 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 TGS1Q96RS0 853 aaKnown RBP5.77□□□□□ -1.49
USP54-216ENST00000498143 FSD1Q9BTV5 496 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 POLR3EQ9NVU0 708 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 GABRQQ9UN88 632 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 MRPS17Q9Y2R5 130 aaKnown RBP5.77□□□□□ -1.49
USP54-216ENST00000498143 SPDYE5A6NIY4 337 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 STK3Q13188 491 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 FKBP5Q13451 457 aaPredicted RBP5.77□□□□□ -1.49
USP54-216ENST00000498143 FAM110CQ1W6H9 321 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 CEP135Q66GS9 1140 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 LRRC43Q8N309 656 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 ITFG2Q969R8 447 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 CDK5RAP3Q96JB5 506 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 GPCPD1Q9NPB8 672 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 MIS18AQ9NYP9 233 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 FLOT1O75955 427 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 BAG4O95429 457 aaKnown RBP5.77□□□□□ -1.49
USP54-216ENST00000498143 DEUP1Q05D60 604 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 C9orf50Q5SZB4 431 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 CAVIN1Q6NZI2 390 aaKnown RBP5.77□□□□□ -1.49
USP54-216ENST00000498143 TBC1D31Q96DN5 1066 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 APOL5Q9BWW9 433 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 TMEM39BQ9GZU3 492 aa5.77□□□□□ -1.49
USP54-216ENST00000498143 SPATA6Q9NWH7 488 aaPredicted RBP5.77□□□□□ -1.49
USP54-216ENST00000498143 CDC42BPBQ9Y5S2 1711 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms