RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	CCDC69	A6NI79	296 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	SH2B2	O14492	632 aa	Predicted RBP	11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	STRN	O43815	780 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	INHA	P05111	366 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	PGK2	P07205	417 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	FDX1	P10109	184 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	RXRA	P19793	462 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	UBXN2A	P68543	259 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	KCTD2	Q14681	263 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	TSGA10IP	Q3SY00	556 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	NPLOC4	Q8TAT6	608 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	PXYLP1	Q8TE99	480 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	TRIB2	Q92519	343 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	TMEM87B	Q96K49	555 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	APBA2	Q99767	749 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	USP26	Q9BXU7	913 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	RNF146	Q9NTX7	359 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	CCPG1	Q9ULG6	757 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	GTF3C3	Q9Y5Q9	886 aa		11.47	□□□□□ -0.57
CALD1-223	ENST00000496024	KLRF2	D3W0D1	207 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	ATP2A1	O14983	1001 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	COBL	O75128	1261 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	HMGCR	P04035	888 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	COPB2	P35606	906 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	OAZ1	P54368	228 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	FGD1	P98174	961 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	GRM4	Q14833	912 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	DHX32	Q7L7V1	743 aa	Known RBP	11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	CCDC144CP	Q8IYA2	1237 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	ADGRF4	Q8IZF3	695 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	ZNF654	Q8IZM8	581 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	ANKRD35	Q8N283	1001 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	KCNB2	Q92953	911 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	DDX11	Q96FC9	970 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	TRERF1	Q96PN7	1200 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	TMEM106C	Q9BVX2	250 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	UNC93B1	Q9H1C4	597 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	RANBP17	Q9H2T7	1088 aa	Known RBP	11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	MAD2L2	Q9UI95	211 aa		11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.46	□□□□□ -0.57
CALD1-223	ENST00000496024	PLXNA1	Q9UIW2	1896 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	POTEF	A5A3E0	1075 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	ICAM1	P05362	532 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	XRCC5	P13010	732 aa	Known RBP	11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	CCL5	P13501	91 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	CAST	P20810	708 aa	Known RBP	11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	EXOSC10	Q01780	885 aa	Known RBP	11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	TROAP	Q12815	778 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	USH1G	Q495M9	461 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	MUM1L1	Q5H9M0	696 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	BLOC1S2	Q6QNY1	142 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	ABRA	Q8N0Z2	381 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	TMTC2	Q8N394	836 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	CHST13	Q8NET6	341 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	PIBF1	Q8WXW3	757 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	MTA3	Q9BTC8	594 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	RNF208	Q9H0X6	261 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	ACAD9	Q9H845	621 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	SLC5A4	Q9NY91	659 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	FLRT1	Q9NZU1	646 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	FBXO40	Q9UH90	709 aa		11.45	□□□□□ -0.58
CALD1-223	ENST00000496024	PALM3	A6NDB9	673 aa	Predicted RBP	11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	SEC24B	O95487	1268 aa		11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	HMGB1	P09429	215 aa	Known RBP	11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	PRKAR2A	P13861	404 aa	Known RBP	11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	CYP2C19	P33261	490 aa		11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	CDC37	Q16543	378 aa	Predicted RBP	11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	QRICH1	Q2TAL8	776 aa		11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	TKFC	Q3LXA3	575 aa		11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	MFSD14C	Q5VZR4	134 aa		11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	NSMF	Q6X4W1	530 aa		11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	SYNE3	Q6ZMZ3	975 aa		11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	HOMER1	Q86YM7	354 aa		11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	TRMT44	Q8IYL2	757 aa	Known RBP	11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	CTCFL	Q8NI51	663 aa	Predicted RBP	11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	JMJD4	Q9H9V9	463 aa		11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	SLC12A7	Q9Y666	1083 aa		11.44	□□□□□ -0.58
CALD1-223	ENST00000496024	MCM3AP	O60318	1980 aa		11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	DDAH1	O94760	285 aa		11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	HOXC6	P09630	235 aa		11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	EN2	P19622	333 aa	Predicted RBP	11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	PSMA5	P28066	241 aa		11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	LIFR	P42702	1097 aa		11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	CNTN2	Q02246	1040 aa		11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	CACNB2	Q08289	660 aa	Predicted RBP	11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	SLC35G1	Q2M3R5	365 aa		11.43	□□□□□ -0.58
CALD1-223	ENST00000496024		Q6ZUG5	572 aa		11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	MICU3	Q86XE3	530 aa		11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	CMTR1	Q8N1G2	835 aa	Known RBP	11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	MAML3	Q96JK9	1138 aa		11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	BRPF3	Q9ULD4	1205 aa		11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	ZNF236	Q9UL36	1845 aa		11.43	□□□□□ -0.58
CALD1-223	ENST00000496024	WDR19	Q8NEZ3	1342 aa		11.42	□□□□□ -0.58
CALD1-223	ENST00000496024	KLF18	A0A0U1RQI7	1052 aa		11.42	□□□□□ -0.58
CALD1-223	ENST00000496024	POTEB2	H3BUK9	544 aa		11.42	□□□□□ -0.58
CALD1-223	ENST00000496024	NFIB	O00712	420 aa		11.42	□□□□□ -0.58
CALD1-223	ENST00000496024	EPB41L2	O43491	1005 aa	Known RBP	11.42	□□□□□ -0.58
CALD1-223	ENST00000496024	PLEKHA8P1	O95397	391 aa		11.42	□□□□□ -0.58
CALD1-223	ENST00000496024	RPS6KB1	P23443	525 aa		11.42	□□□□□ -0.58
CALD1-223	ENST00000496024	CNGA1	P29973	690 aa		11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms