RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 BAG5Q9UL15 447 aa14.42□□□□□ -0.1
COL6A3-212ENST00000491769 DUOX2Q9NRD8 1548 aa14.42□□□□□ -0.1
COL6A3-212ENST00000491769 STAT1P42224 750 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 RINT1Q6NUQ1 792 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 FAM196AQ6ZSG2 479 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 ZFYVE9O95405 1425 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 ERVV-2B6SEH9 535 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 KRT10P13645 584 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 PPM1KQ8N3J5 372 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 GBP7Q8N8V2 638 aaPredicted RBP14.41□□□□□ -0.1
COL6A3-212ENST00000491769 ZNF496Q96IT1 587 aaPredicted RBP14.41□□□□□ -0.1
COL6A3-212ENST00000491769 RIC8AQ9NPQ8 531 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 ADD3Q9UEY8 706 aaKnown RBP14.41□□□□□ -0.1
COL6A3-212ENST00000491769 AMFRQ9UKV5 643 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 PTPROQ16827 1216 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 MIS18BP1Q6P0N0 1132 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 GPKOWQ92917 476 aaPredicted RBP eCLIP14.41□□□□□ -0.1
COL6A3-212ENST00000491769 A0A1W2PP64 1363 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 IL1RL1Q01638 556 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 KRT27Q7Z3Y8 459 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 ZBBXA8MT70 800 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 VPS41P49754 854 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 ANKRD42Q8N9B4 389 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 PLCB1Q9NQ66 1216 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 LMNB1P20700 586 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 RFC1P35251 1148 aaPredicted RBP14.41□□□□□ -0.1
COL6A3-212ENST00000491769 MCTP2Q6DN12 878 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 ATP6V1E2Q96A05 226 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 SPATA17Q96L03 361 aa14.41□□□□□ -0.1
COL6A3-212ENST00000491769 LLPHQ9BRT6 129 aaKnown RBP14.41□□□□□ -0.1
COL6A3-212ENST00000491769 PPP1R12AO14974 1030 aaPredicted RBP14.4□□□□□ -0.1
COL6A3-212ENST00000491769 ZNF654Q8IZM8 581 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 MYOCDQ8IZQ8 938 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 FAM149B1Q96BN6 582 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 PKNOX2Q96KN3 472 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 H7C0C1 242 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 ATP5OP48047 213 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 FANCCQ00597 558 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 CYP4A11Q02928 519 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 MAD1L1Q9Y6D9 718 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 GDF11O95390 407 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 CHRNDQ07001 517 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 BLIDQ8IZY5 108 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 C2orf69Q8N8R5 385 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 USP19O94966 1318 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 UBN2Q6ZU65 1347 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 KLRF2D3W0D1 207 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 ADCY8P40145 1251 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 EVCP57679 992 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 GOLGA5Q8TBA6 731 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 P3H4Q92791 437 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 PCDHA1Q9Y5I3 950 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 WDR17Q8IZU2 1322 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 N4BP1O75113 896 aaKnown RBP14.4□□□□□ -0.1
COL6A3-212ENST00000491769 PHBP35232 272 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 PCDHB4Q9Y5E5 795 aa14.4□□□□□ -0.1
COL6A3-212ENST00000491769 RNF8O76064 485 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 GBP1P32455 592 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 IQCB1Q15051 598 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 TTBK2Q6IQ55 1244 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 PNMA1Q8ND90 353 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 ZNF202O95125 648 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 PCK1P35558 622 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 MLKLQ8NB16 471 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 PI4K2BQ8TCG2 481 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 ZNF653Q96CK0 615 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 NACC1Q96RE7 527 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 CCND2P30279 289 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 SLC12A1Q13621 1099 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 DENND2CQ68D51 928 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 KSR1Q8IVT5 923 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 TRMT44Q8IYL2 757 aaKnown RBP14.39□□□□□ -0.11
COL6A3-212ENST00000491769 RABEP2Q9H5N1 569 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 ZNF215Q9UL58 517 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-212ENST00000491769 ZNF804BA4D1E1 1349 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 ANKRD20A3Q5VUR7 823 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 RFX6Q8HWS3 928 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 PPP1R12CQ9BZL4 782 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 ATP8B3O60423 1300 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 SERPINB2P05120 415 aa14.39□□□□□ -0.11
COL6A3-212ENST00000491769 RAPH1Q70E73 1250 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 EXOC8Q8IYI6 725 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 ARHGAP24Q8N264 748 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 HNRNPDLO14979 420 aaKnown RBP14.38□□□□□ -0.11
COL6A3-212ENST00000491769 PGBD1Q96JS3 809 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 ZNF577Q9BSK1 485 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 SLC38A10Q9HBR0 1119 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 FAM114A2Q9NRY5 505 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 SYCP2Q9BX26 1530 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 C7orf31Q8N865 590 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 SLF1Q9BQI6 1058 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 EFCC1Q9HA90 598 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 SNX14Q9Y5W7 946 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 SRGAP2BP0DMP2 458 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 FBXW4P57775 412 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 HS1BP3Q53T59 392 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 MIGA2Q7L4E1 593 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 AFAP1L1Q8TED9 768 aa14.38□□□□□ -0.11
COL6A3-212ENST00000491769 ZNF608Q9ULD9 1512 aaPredicted RBP14.38□□□□□ -0.11
COL6A3-212ENST00000491769 GARSP41250 739 aaKnown RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms