RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 POLR3DP05423 398 aaPredicted RBP11.78□□□□□ -0.52
SMARCB1-206ENST00000477836 COPB2P35606 906 aa11.78□□□□□ -0.52
SMARCB1-206ENST00000477836 NOL8Q76FK4 1167 aaKnown RBP11.78□□□□□ -0.52
SMARCB1-206ENST00000477836 CLEC10AQ8IUN9 316 aa11.78□□□□□ -0.52
SMARCB1-206ENST00000477836 ABHD16BQ9H3Z7 469 aa11.78□□□□□ -0.52
SMARCB1-206ENST00000477836 VCPKMTQ9H867 229 aa11.78□□□□□ -0.52
SMARCB1-206ENST00000477836 ARHGEF10LQ9HCE6 1279 aa11.78□□□□□ -0.52
SMARCB1-206ENST00000477836 ZNF214Q9UL59 606 aaPredicted RBP11.78□□□□□ -0.52
SMARCB1-206ENST00000477836 HDAC5Q9UQL6 1122 aa11.78□□□□□ -0.52
SMARCB1-206ENST00000477836 DMDP11532 3685 aa11.78□□□□□ -0.52
SMARCB1-206ENST00000477836 SCN5AQ14524 2016 aa11.77□□□□□ -0.52
SMARCB1-206ENST00000477836 GFRA3O60609 400 aa11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 SLC4A3P48751 1232 aa11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 PTPN5P54829 565 aa11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 PSMC6P62333 389 aa11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 EVX2Q03828 476 aa11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 TMEM179Q6ZVK1 233 aa11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 ZNF467Q7Z7K2 595 aaPredicted RBP11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 SIAH1Q8IUQ4 282 aa11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 SSH1Q8WYL5 1049 aa11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 SH2D4AQ9H788 454 aa11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 PIH1D3Q9NQM4 214 aaKnown RBP11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 RCAN3Q9UKA8 241 aa11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 MTUS1Q9ULD2 1270 aa11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 TMX2Q9Y320 296 aa11.77□□□□□ -0.53
SMARCB1-206ENST00000477836 MCM3APO60318 1980 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 DNAJC25-GNG10A0A024R161 153 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 LCHNA4D1U4 455 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 CYP2C9P11712 490 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 ZAP70P43403 619 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 NKX3-2P78367 333 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 TNFAIP2Q03169 654 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 GABPAQ06546 454 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 PUS10Q3MIT2 529 aaKnown RBP11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 CCDC158Q5M9N0 1113 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 IER5LQ5T953 404 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 ARMCX2Q7L311 632 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 CERS3Q8IU89 383 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 REPS2Q8NFH8 660 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 SEZ6LQ9BYH1 1024 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 FTOQ9C0B1 505 aaKnown RBP eCLIP11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 PPP1R9AQ9ULJ8 1098 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 ASTN1O14525 1302 aa11.76□□□□□ -0.53
SMARCB1-206ENST00000477836 VPS13AQ96RL7 3174 aa11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 ZDBF2Q9HCK1 2354 aa11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 H3BQ06 376 aaPredicted RBP11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 RAD21O60216 631 aa11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 IDH1O75874 414 aaKnown RBP11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 ICA1Q05084 483 aa11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 FSCN1Q16658 493 aaKnown RBP11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 SNRNP48Q6IEG0 339 aaKnown RBP11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 TLK2Q86UE8 772 aa11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 MAGEB6Q8N7X4 407 aa11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 ALDH8A1Q9H2A2 487 aaPredicted RBP11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 SUGCTQ9HAC7 445 aa11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 TRMT13Q9NUP7 481 aaKnown RBP11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 RIPK3Q9Y572 518 aa11.75□□□□□ -0.53
SMARCB1-206ENST00000477836 DYNC1LI2O43237 492 aaPredicted RBP11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 ZEB2O60315 1214 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 IGSF3O75054 1194 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 NEFLP07196 543 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 CT47B1P0C2W7 299 aaPredicted RBP11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 SUPT20HL2P0C7V6 817 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 PTGS1P23219 599 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 ZP2Q05996 745 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 TMCO2Q7Z6W1 182 aaPredicted RBP11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 CCDC144CPQ8IYA2 1237 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 MEIS3Q99687 375 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 ZBED2Q9BTP6 218 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 TEX13BQ9BXU2 312 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 KATNBL1Q9H079 304 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 AP5M1Q9H0R1 490 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 FAM86C1Q9NVL1 165 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 NAV1Q8NEY1 1877 aa11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 ZFHX2Q9C0A1 2572 aaPredicted RBP11.74□□□□□ -0.53
SMARCB1-206ENST00000477836 TNKSO95271 1327 aa11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 AKR1B1P15121 316 aa11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 RFC2P35250 354 aa11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 KCNJ6P48051 423 aa11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 G3BP1Q13283 466 aaKnown RBP eCLIP11.73□□□□□ -0.532e-7■■■□□ 15.2
SMARCB1-206ENST00000477836 FAM83BQ5T0W9 1011 aa11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 ANKRD35Q8N283 1001 aa11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 NEK9Q8TD19 979 aa11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 FGD4Q96M96 766 aa11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 DBNDD2Q9BQY9 259 aa11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 UPF3BQ9BZI7 483 aaKnown RBP11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 SPTBN4Q9H254 2564 aa11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 MCM9Q9NXL9 1143 aa11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 PRKAG3Q9UGI9 489 aa11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 GNEQ9Y223 722 aaKnown RBP11.73□□□□□ -0.53
SMARCB1-206ENST00000477836 PTPRSQ13332 1948 aa11.72□□□□□ -0.53
SMARCB1-206ENST00000477836 C19orf67A6NJJ6 358 aa11.72□□□□□ -0.53
SMARCB1-206ENST00000477836 IRS1P35568 1242 aa11.72□□□□□ -0.53
SMARCB1-206ENST00000477836 TCF15Q12870 199 aa11.72□□□□□ -0.53
SMARCB1-206ENST00000477836 EP400NLQ6ZTU2 488 aa11.72□□□□□ -0.53
SMARCB1-206ENST00000477836 ADHFE1Q8IWW8 467 aa11.72□□□□□ -0.53
SMARCB1-206ENST00000477836 CPXCR1Q8N123 301 aa11.72□□□□□ -0.53
SMARCB1-206ENST00000477836 TGS1Q96RS0 853 aaKnown RBP11.72□□□□□ -0.53
SMARCB1-206ENST00000477836 PRRX2Q99811 253 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms