RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ADCY6O43306 1168 aa16.66■□□□□ 0.26
UPF3A-204ENST00000475218 SLC16A2P36021 539 aa16.66■□□□□ 0.26
UPF3A-204ENST00000475218 CNTN2Q02246 1040 aa16.66■□□□□ 0.26
UPF3A-204ENST00000475218 PPP4R3BQ5MIZ7 849 aa16.66■□□□□ 0.26
UPF3A-204ENST00000475218 ZNF467Q7Z7K2 595 aaPredicted RBP16.66■□□□□ 0.26
UPF3A-204ENST00000475218 DDX11Q96FC9 970 aa16.66■□□□□ 0.26
UPF3A-204ENST00000475218 A1CFQ9NQ94 594 aaKnown RBP16.66■□□□□ 0.26
UPF3A-204ENST00000475218 SOX1O00570 391 aaPredicted RBP16.65■□□□□ 0.26
UPF3A-204ENST00000475218 FDX1P10109 184 aa16.65■□□□□ 0.26
UPF3A-204ENST00000475218 TOP1P11387 765 aaKnown RBP16.65■□□□□ 0.26
UPF3A-204ENST00000475218 BMP8BP34820 402 aa16.65■□□□□ 0.26
UPF3A-204ENST00000475218 MUM1L1Q5H9M0 696 aa16.65■□□□□ 0.26
UPF3A-204ENST00000475218 TTC22Q5TAA0 569 aa16.65■□□□□ 0.26
UPF3A-204ENST00000475218 BTNL9Q6UXG8 535 aa16.65■□□□□ 0.26
UPF3A-204ENST00000475218 MSL3Q8N5Y2 521 aaKnown RBP16.65■□□□□ 0.26
UPF3A-204ENST00000475218 FAM133AQ8N9E0 248 aa16.65■□□□□ 0.26
UPF3A-204ENST00000475218 ARRDC4Q8NCT1 418 aa16.65■□□□□ 0.26
UPF3A-204ENST00000475218 DCAF4Q8WV16 495 aa16.65■□□□□ 0.26
UPF3A-204ENST00000475218 KATNBL1Q9H079 304 aa16.65■□□□□ 0.26
UPF3A-204ENST00000475218 DIAPH3Q9NSV4 1193 aa16.65■□□□□ 0.26
UPF3A-204ENST00000475218 ISY1Q9ULR0 285 aaKnown RBP16.65■□□□□ 0.26
UPF3A-204ENST00000475218 LRRC37A2A6NM11 1700 aa16.65■□□□□ 0.26
UPF3A-204ENST00000475218 LTBP2Q14767 1821 aa16.65■□□□□ 0.26
UPF3A-204ENST00000475218 ADAMTS4O75173 837 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 PGK1P00558 417 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 IRX5P78411 483 aaPredicted RBP16.64■□□□□ 0.25
UPF3A-204ENST00000475218 SNX17Q15036 470 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 CCDC174Q6PII3 467 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 MFSD6Q6ZSS7 791 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 RNF146Q9NTX7 359 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 FBXO40Q9UH90 709 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 DDX49Q9Y6V7 483 aaKnown RBP16.64■□□□□ 0.25
UPF3A-204ENST00000475218 FRMPD2Q68DX3 1309 aaPredicted RBP16.64■□□□□ 0.25
UPF3A-204ENST00000475218 SOWAHBA6NEL2 793 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 SNHG28P0DPA3 235 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 PDHBP11177 359 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 PCP11498 1178 aaKnown RBP16.64■□□□□ 0.25
UPF3A-204ENST00000475218 ADCYAP1R1P41586 468 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 MFAP1P55081 439 aaKnown RBP16.64■□□□□ 0.25
UPF3A-204ENST00000475218 IKQ13123 557 aaPredicted RBP16.64■□□□□ 0.25
UPF3A-204ENST00000475218 SLC39A5Q6ZMH5 540 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 ANKRD35Q8N283 1001 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 ZKSCAN3Q9BRR0 538 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 DSCC1Q9BVC3 393 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 RANBP17Q9H2T7 1088 aaKnown RBP16.64■□□□□ 0.25
UPF3A-204ENST00000475218 ACAD9Q9H845 621 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 XPNPEP3Q9NQH7 507 aa16.64■□□□□ 0.25
UPF3A-204ENST00000475218 CTDP1Q9Y5B0 961 aaPredicted RBP16.64■□□□□ 0.25
UPF3A-204ENST00000475218 A0A1W2PPC1 479 aa16.63■□□□□ 0.25
UPF3A-204ENST00000475218 AKR1A1P14550 325 aa16.63■□□□□ 0.25
UPF3A-204ENST00000475218 RTP1P59025 263 aa16.63■□□□□ 0.25
UPF3A-204ENST00000475218 CCDC96Q2M329 555 aa16.63■□□□□ 0.25
UPF3A-204ENST00000475218 FERMT2Q96AC1 680 aa16.63■□□□□ 0.25
UPF3A-204ENST00000475218 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.63■□□□□ 0.25
UPF3A-204ENST00000475218 PHF24Q9UPV7 400 aa16.63■□□□□ 0.25
UPF3A-204ENST00000475218 KBTBD13C9JR72 458 aa16.62■□□□□ 0.25
UPF3A-204ENST00000475218 HIP1O00291 1037 aa16.62■□□□□ 0.25
UPF3A-204ENST00000475218 ZNF213O14771 459 aa16.62■□□□□ 0.25
UPF3A-204ENST00000475218 RARBP10826 455 aa16.62■□□□□ 0.25
UPF3A-204ENST00000475218 ALAS1P13196 640 aa16.62■□□□□ 0.25
UPF3A-204ENST00000475218 CCSAPQ6IQ19 270 aaPredicted RBP16.62■□□□□ 0.25
UPF3A-204ENST00000475218 CCDC144CPQ8IYA2 1237 aa16.62■□□□□ 0.25
UPF3A-204ENST00000475218 TTC14Q96N46 770 aa16.62■□□□□ 0.25
UPF3A-204ENST00000475218 TRERF1Q96PN7 1200 aa16.62■□□□□ 0.25
UPF3A-204ENST00000475218 PURBQ96QR8 312 aaKnown RBP16.62■□□□□ 0.25
UPF3A-204ENST00000475218 GPCPD1Q9NPB8 672 aa16.62■□□□□ 0.25
UPF3A-204ENST00000475218 CNPY2Q9Y2B0 182 aa16.62■□□□□ 0.25
UPF3A-204ENST00000475218 SYNRGQ9UMZ2 1314 aa16.62■□□□□ 0.25
UPF3A-204ENST00000475218 MYADML2A6NDP7 307 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 MYCNP04198 464 aaPredicted RBP16.61■□□□□ 0.25
UPF3A-204ENST00000475218 ZNF543Q08ER8 600 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 ACVR2BQ13705 512 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 SYDE2Q5VT97 1194 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 ARMCX2Q7L311 632 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 ZHX1Q9UKY1 873 aaPredicted RBP16.61■□□□□ 0.25
UPF3A-204ENST00000475218 COL6A3P12111 3177 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 B4E1Z4 1266 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 KDM4AO75164 1064 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 ICAM1P05362 532 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 TKFCQ3LXA3 575 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 TRIM60Q495X7 471 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 KLHDC9Q8NEP7 349 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 ESR2Q92731 530 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 RNF41Q9H4P4 317 aaPredicted RBP16.61■□□□□ 0.25
UPF3A-204ENST00000475218 CYP39A1Q9NYL5 469 aa16.61■□□□□ 0.25
UPF3A-204ENST00000475218 POTEB2H3BUK9 544 aa16.6■□□□□ 0.25
UPF3A-204ENST00000475218 MDM2Q00987 491 aaPredicted RBP16.6■□□□□ 0.25
UPF3A-204ENST00000475218 LRCH3Q96II8 777 aa16.6■□□□□ 0.25
UPF3A-204ENST00000475218 CPVLQ9H3G5 476 aa16.6■□□□□ 0.25
UPF3A-204ENST00000475218 ZSWIM5Q9P217 1185 aa16.6■□□□□ 0.25
UPF3A-204ENST00000475218 FAM184BQ9ULE4 1060 aa16.6■□□□□ 0.25
UPF3A-204ENST00000475218 CCPG1Q9ULG6 757 aa16.6■□□□□ 0.25
UPF3A-204ENST00000475218 ATP11BQ9Y2G3 1177 aa16.6■□□□□ 0.25
UPF3A-204ENST00000475218 A0A1W2PQ45 241 aaPredicted RBP16.59■□□□□ 0.25
UPF3A-204ENST00000475218 A0A1W2PQY0 241 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 NFIBO00712 420 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 CTAGE5O15320 804 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 PTGS1P23219 599 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 CCDC144BQ3MJ40 725 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 C1orf53Q5VUE5 145 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms