RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 TMEM60Q9H2L4 133 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 GPCPD1Q9NPB8 672 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 ZNF277Q9NRM2 450 aaPredicted RBP13.88□□□□□ -0.19
SYNE1-222ENST00000474655 PIM2Q9P1W9 311 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 HDAC9Q9UKV0 1011 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 ZNRF3Q9ULT6 936 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 MYH7BA7E2Y1 1941 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 FAM196BA6NMK8 535 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 ZBTB5O15062 677 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 PPP1R11O60927 126 aaPredicted RBP13.88□□□□□ -0.19
SYNE1-222ENST00000474655 TTBK2Q6IQ55 1244 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 DTHD1Q6ZMT9 781 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 CCDC186Q7Z3E2 898 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 NEK8Q86SG6 692 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 FAM151AQ8WW52 585 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 TRIM34Q9BYJ4 488 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 CCSER1Q9C0I3 900 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 RIC8AQ9NPQ8 531 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 DACH1Q9UI36 760 aa13.88□□□□□ -0.19
SYNE1-222ENST00000474655 OFD1O75665 1012 aa13.87□□□□□ -0.19
SYNE1-222ENST00000474655 RAD17O75943 681 aa13.87□□□□□ -0.19
SYNE1-222ENST00000474655 CLK2P49760 499 aaKnown RBP13.87□□□□□ -0.19
SYNE1-222ENST00000474655 SEPT2Q15019 361 aa13.87□□□□□ -0.19
SYNE1-222ENST00000474655 ABCB5Q2M3G0 1257 aa13.87□□□□□ -0.19
SYNE1-222ENST00000474655 SPDYE2Q495Y8 402 aa13.87□□□□□ -0.19
SYNE1-222ENST00000474655 GRAMD1CQ8IYS0 662 aa13.87□□□□□ -0.19
SYNE1-222ENST00000474655 OGFOD1Q8N543 542 aa13.87□□□□□ -0.19
SYNE1-222ENST00000474655 COA7Q96BR5 231 aa13.87□□□□□ -0.19
SYNE1-222ENST00000474655 AK8Q96MA6 479 aa13.87□□□□□ -0.19
SYNE1-222ENST00000474655 TMOD2Q9NZR1 351 aa13.87□□□□□ -0.19
SYNE1-222ENST00000474655 ZNF70Q9UC06 446 aaPredicted RBP13.87□□□□□ -0.19
SYNE1-222ENST00000474655 NRBP1Q9UHY1 535 aa13.87□□□□□ -0.19
SYNE1-222ENST00000474655 PTGS1P23219 599 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 MMP14P50281 582 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 ADCY7P51828 1080 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 ICA1Q05084 483 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 DLGAP5Q15398 846 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 SHROOM1Q2M3G4 852 aaPredicted RBP13.86□□□□□ -0.19
SYNE1-222ENST00000474655 DRC7Q8IY82 874 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 ENOX1Q8TC92 643 aaKnown RBP13.86□□□□□ -0.19
SYNE1-222ENST00000474655 KIAA1524Q8TCG1 905 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 TBCKQ8TEA7 893 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 GMCL1Q96IK5 515 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 ZBED3Q96IU2 234 aaPredicted RBP13.86□□□□□ -0.19
SYNE1-222ENST00000474655 CSRNP1Q96S65 589 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 CNTNAP1P78357 1384 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 USP17L10C9JJH3 530 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 EDIL3O43854 480 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 ERCC5P28715 1186 aaPredicted RBP13.86□□□□□ -0.19
SYNE1-222ENST00000474655 TXLNAP40222 546 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 CCDC96Q2M329 555 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 SLFN13Q68D06 897 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 KCTD1Q719H9 257 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 NIM1KQ8IY84 436 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 MTRQ99707 1265 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 GLT8D2Q9H1C3 349 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 SPTLC3Q9NUV7 552 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 IMPACTQ9P2X3 320 aa13.86□□□□□ -0.19
SYNE1-222ENST00000474655 BIN2Q9UBW5 565 aaPredicted RBP13.86□□□□□ -0.19
SYNE1-222ENST00000474655 F5H6K3 240 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 TBC1D12O60347 775 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 NEMFO60524 1076 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 CCNT1O60563 726 aaKnown RBP13.85□□□□□ -0.19
SYNE1-222ENST00000474655 OR52Z1P0C646 297 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 SLC1A4P43007 532 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 JAG1P78504 1218 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 ATP2B2Q01814 1243 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 KLRC3Q07444 240 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 SEMA3FQ13275 785 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 RRP1BQ14684 758 aaKnown RBP13.85□□□□□ -0.19
SYNE1-222ENST00000474655 CCDC144BQ3MJ40 725 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 RBM26Q5T8P6 1007 aaKnown RBP13.85□□□□□ -0.19
SYNE1-222ENST00000474655 FAM83AQ86UY5 434 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 MTFR1LQ9H019 292 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 DISC1Q9NRI5 854 aa13.85□□□□□ -0.19
SYNE1-222ENST00000474655 GOLGB1Q14789 3259 aaKnown RBP13.85□□□□□ -0.19
SYNE1-222ENST00000474655 GTPBP6O43824 516 aaPredicted RBP13.84□□□□□ -0.19
SYNE1-222ENST00000474655 MYL1P05976 194 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 LMOD1P29536 600 aaPredicted RBP13.84□□□□□ -0.19
SYNE1-222ENST00000474655 SLC16A2P36021 539 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 AFMP43652 599 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 MRPL12P52815 198 aaKnown RBP13.84□□□□□ -0.19
SYNE1-222ENST00000474655 FANCCQ00597 558 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 MAP3K10Q02779 954 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 CXCL9Q07325 125 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 LETM2Q2VYF4 491 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 NAALADL2Q58DX5 795 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 JAKMIP3Q5VZ66 844 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 BTNL9Q6UXG8 535 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 MTMR9Q96QG7 549 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 MED15Q96RN5 788 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 XPO4Q9C0E2 1151 aaKnown RBP13.84□□□□□ -0.19
SYNE1-222ENST00000474655 TMEM260Q9NX78 707 aa13.84□□□□□ -0.19
SYNE1-222ENST00000474655 ZBTB12Q9Y330 459 aaPredicted RBP13.84□□□□□ -0.19
SYNE1-222ENST00000474655 TCP10L2B9ZVM9 353 aa13.83□□□□□ -0.19
SYNE1-222ENST00000474655 GDF11O95390 407 aa13.83□□□□□ -0.19
SYNE1-222ENST00000474655 GH2P01242 217 aa13.83□□□□□ -0.19
SYNE1-222ENST00000474655 ZNF18P17022 549 aa13.83□□□□□ -0.19
SYNE1-222ENST00000474655 CUL4BQ13620 913 aa13.83□□□□□ -0.19
SYNE1-222ENST00000474655 NOLC1Q14978 699 aaKnown RBP eCLIP13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms